CRISPRone

CRISPRone report for GCA_009903385.1_ASM990338v1

♦ Seq 1: QLOB01000001.1 Clostridioides difficile strain CBA7209 CBA7209_contig1, whole genome shotgun sequence

⇒Summary: seq-len = 4355981 bp; # of CRISPR array = 12; # of cas gene = 19  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 885188-896454 bp 2 Locus 2: 1505331-1505624 bp 3 Locus 3: 1529534-1535337 bp 4 Locus 4: 1752178-1752601 bp 5 Locus 5: 1828192-1830482 bp 6 Locus 6: 1862905-1863459 bp 7 Locus 7: 1944001-1944291 bp 8 Locus 8: 2081002-2082419 bp 9 Locus 9: 2393175-2393402 bp 10 Locus 10: 2745034-2745517 bp 11 Locus 11: 2910854-2920585 bp 12 Locus 12: 2995743-2996302 bp Zoom in on locus 1 x26 Zoom in on locus 2 x5 Zoom in on locus 3 x6 x5 x2 Zoom in on locus 4 x7 Zoom in on locus 5 Zoom in on locus 6 x9 Zoom in on locus 7 x5 Zoom in on locus 8 x22 Zoom in on locus 9 x4 Zoom in on locus 10 x8 Zoom in on locus 11 Zoom in on locus 12 x9 Gene: pfam13280:WYL Type: other Location: 885188-886153 bp Gene: pfam01881:cas6 Type: other Location: 886231-886968 bp Gene: unk Type: unknown Location: 886974-887480 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 887538-888824 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 888826-889740 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 889742-890443 bp Gene: cd09641:cas3HD Type: Type-I Location: 890454-892775 bp Gene: pfam01930:cas4 Type: Type-I Location: 892790-893341 bp Gene: cd09722:cas1 Type: universal Location: 893344-894324 bp Gene: cd09725:cas2 Type: universal Location: 894327-894593 bp CRISPR array Location: 894777-896454 bp Num of repeats: 26 Spacers: s1-s25 CRISPR array Location: 894777-896454 bp Num of repeats: 26 Spacers: s1-s25 CRISPR array Location: 1505331-1505624 bp Num of repeats: 5 Spacers: s26-s29 CRISPR array Location: 1505331-1505624 bp Num of repeats: 5 Spacers: s26-s29 CRISPR array Location: 1529534-1529895 bp Num of repeats: 6 Spacers: s30-s34 CRISPR array Location: 1529534-1529895 bp Num of repeats: 6 Spacers: s30-s34 CRISPR array Location: 1532538-1532831 bp Num of repeats: 5 Spacers: s35-s38 CRISPR array Location: 1532538-1532831 bp Num of repeats: 5 Spacers: s35-s38 CRISPR array Location: 1535242-1535337 bp Num of repeats: 2 Spacers: s39-s39 CRISPR array Location: 1535242-1535337 bp Num of repeats: 2 Spacers: s39-s39 CRISPR array Location: 1752178-1752601 bp Num of repeats: 7 Spacers: s40-s45 CRISPR array Location: 1752178-1752601 bp Num of repeats: 7 Spacers: s40-s45 Gene: mkCas0136:csm2gr11 Type: Subtype-III-A Location: 1828192-1828791 bp Gene: unk Type: unknown Location: 1828961-1829428 bp Gene: COG2378:WYL Type: other Location: 1829539-1829862 bp Gene: pfam13280:WYL Type: other Location: 1829979-1830482 bp CRISPR array Location: 1862905-1863459 bp Num of repeats: 9 Spacers: s46-s53 CRISPR array Location: 1862905-1863459 bp Num of repeats: 9 Spacers: s46-s53 CRISPR array Location: 1944001-1944291 bp Num of repeats: 5 Spacers: s54-s57 CRISPR array Location: 1944001-1944291 bp Num of repeats: 5 Spacers: s54-s57 CRISPR array Location: 2081002-2082419 bp Num of repeats: 22 Spacers: s58-s78 CRISPR array Location: 2081002-2082419 bp Num of repeats: 22 Spacers: s58-s78 CRISPR array Location: 2393175-2393402 bp Num of repeats: 4 Spacers: s79-s81 CRISPR array Location: 2393175-2393402 bp Num of repeats: 4 Spacers: s79-s81 CRISPR array Location: 2745034-2745517 bp Num of repeats: 8 Spacers: s82-s88 CRISPR array Location: 2745034-2745517 bp Num of repeats: 8 Spacers: s82-s88 Gene: cd09641:cas3HD Type: Type-I Location: 2910854-2913262 bp Gene: cd09693:cas5 Type: Type-I Location: 2913289-2914086 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 2914102-2915115 bp Gene: unk Type: unknown Location: 2915135-2915581 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 2915644-2916609 bp Gene: pfam01881:cas6 Type: other Location: 2916614-2917351 bp Gene: unk Type: unknown Location: 2917665-2918123 bp Gene: cas14:cas14 Type: Type-V Location: 2918151-2919323 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 2919476-2920585 bp CRISPR array Location: 2995743-2996302 bp Num of repeats: 9 Spacers: s89-s96 CRISPR array Location: 2995743-2996302 bp Num of repeats: 9 Spacers: s89-s96 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 894777-896454 bp]: array | spacers
           [Locus range 1505331-1505624 bp]: array | spacers
           [Locus range 1529534-1529895 bp]: array | spacers
           [Locus range 1532538-1532831 bp]: array | spacers
           [Locus range 1535242-1535337 bp]: array | spacers
           [Locus range 1752178-1752601 bp]: array | spacers
           [Locus range 1862905-1863459 bp]: array | spacers
           [Locus range 1944001-1944291 bp]: array | spacers
           [Locus range 2081002-2082419 bp]: array | spacers
           [Locus range 2393175-2393402 bp]: array | spacers
           [Locus range 2745034-2745517 bp]: array | spacers
           [Locus range 2995743-2996302 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)