CRISPRone

CRISPRone report for GCA_009903395.1_ASM990339v1

♦ Seq 1: QLOA01000002.1 Clostridioides difficile strain CBA7207 CBA7207_contig2, whole genome shotgun sequence

⇒Summary: seq-len = 4300631 bp; # of CRISPR array = 12; # of cas gene = 16  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1379379-1379672 bp 2 Locus 2: 1403581-1409384 bp 3 Locus 3: 1626225-1626648 bp 4 Locus 4: 1736959-1737513 bp 5 Locus 5: 1818064-1818354 bp 6 Locus 6: 1954948-1956365 bp 7 Locus 7: 2267106-2267333 bp 8 Locus 8: 2618964-2619447 bp 9 Locus 9: 2784783-2794515 bp 10 Locus 10: 2869670-2870229 bp 11 Locus 11: 3404147-3415412 bp Zoom in on locus 1 x5 Zoom in on locus 2 x6 x5 x2 Zoom in on locus 3 x7 Zoom in on locus 4 x9 Zoom in on locus 5 x5 Zoom in on locus 6 x22 Zoom in on locus 7 x4 Zoom in on locus 8 x8 Zoom in on locus 9 Zoom in on locus 10 x9 Zoom in on locus 11 x26 CRISPR array Location: 1379379-1379672 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 1379379-1379672 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 1403581-1403942 bp Num of repeats: 6 Spacers: s5-s9 CRISPR array Location: 1403581-1403942 bp Num of repeats: 6 Spacers: s5-s9 CRISPR array Location: 1406585-1406878 bp Num of repeats: 5 Spacers: s10-s13 CRISPR array Location: 1406585-1406878 bp Num of repeats: 5 Spacers: s10-s13 CRISPR array Location: 1409289-1409384 bp Num of repeats: 2 Spacers: s14-s14 CRISPR array Location: 1409289-1409384 bp Num of repeats: 2 Spacers: s14-s14 CRISPR array Location: 1626225-1626648 bp Num of repeats: 7 Spacers: s15-s20 CRISPR array Location: 1626225-1626648 bp Num of repeats: 7 Spacers: s15-s20 CRISPR array Location: 1736959-1737513 bp Num of repeats: 9 Spacers: s21-s28 CRISPR array Location: 1736959-1737513 bp Num of repeats: 9 Spacers: s21-s28 CRISPR array Location: 1818064-1818354 bp Num of repeats: 5 Spacers: s29-s32 CRISPR array Location: 1818064-1818354 bp Num of repeats: 5 Spacers: s29-s32 CRISPR array Location: 1954948-1956365 bp Num of repeats: 22 Spacers: s33-s53 CRISPR array Location: 1954948-1956365 bp Num of repeats: 22 Spacers: s33-s53 CRISPR array Location: 2267106-2267333 bp Num of repeats: 4 Spacers: s54-s56 CRISPR array Location: 2267106-2267333 bp Num of repeats: 4 Spacers: s54-s56 CRISPR array Location: 2618964-2619447 bp Num of repeats: 8 Spacers: s57-s63 CRISPR array Location: 2618964-2619447 bp Num of repeats: 8 Spacers: s57-s63 Gene: cd09641:cas3HD Type: Type-I Location: 2784783-2787191 bp Gene: cd09693:cas5 Type: Type-I Location: 2787218-2788015 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 2788031-2789044 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 2789064-2790539 bp Gene: pfam01881:cas6 Type: other Location: 2790544-2791281 bp Gene: unk Type: unknown Location: 2791595-2792053 bp Gene: cas14:cas14 Type: Type-V Location: 2792081-2793253 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 2793406-2794515 bp CRISPR array Location: 2869670-2870229 bp Num of repeats: 9 Spacers: s64-s71 CRISPR array Location: 2869670-2870229 bp Num of repeats: 9 Spacers: s64-s71 CRISPR array Location: 3404147-3405823 bp Num of repeats: 26 Spacers: s72-s96 CRISPR array Location: 3404147-3405823 bp Num of repeats: 26 Spacers: s72-s96 Gene: cd09725:cas2 Type: universal Location: 3406007-3406273 bp Gene: cd09722:cas1 Type: universal Location: 3406276-3407256 bp Gene: pfam01930:cas4 Type: Type-I Location: 3407259-3407777 bp Gene: cd09641:cas3HD Type: Type-I Location: 3407825-3410146 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 3410157-3410858 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 3410860-3411774 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 3411776-3413062 bp Gene: unk Type: unknown Location: 3413120-3413626 bp Gene: pfam01881:cas6 Type: other Location: 3413632-3414426 bp Gene: pfam13280:WYL Type: other Location: 3414447-3415412 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1379379-1379672 bp]: array | spacers
           [Locus range 1403581-1403942 bp]: array | spacers
           [Locus range 1406585-1406878 bp]: array | spacers
           [Locus range 1409289-1409384 bp]: array | spacers
           [Locus range 1626225-1626648 bp]: array | spacers
           [Locus range 1736959-1737513 bp]: array | spacers
           [Locus range 1818064-1818354 bp]: array | spacers
           [Locus range 1954948-1956365 bp]: array | spacers
           [Locus range 2267106-2267333 bp]: array | spacers
           [Locus range 2618964-2619447 bp]: array | spacers
           [Locus range 2869670-2870229 bp]: array | spacers
           [Locus range 3404147-3405823 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)