CRISPRone

CRISPRone report for GCA_009903465.1_ASM990346v1

♦ Seq 1: QLNZ01000001.1 Clostridioides difficile strain CBA7206 CBA7206_contig1, whole genome shotgun sequence

⇒Summary: seq-len = 4148821 bp; # of CRISPR array = 8; # of cas gene = 14  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 111873-123863 bp 2 Locus 2: 313293-314043 bp 3 Locus 3: 476011-483876 bp 4 Locus 4: 557123-557680 bp 5 Locus 5: 3247510-3247672 bp 6 Locus 6: 3565526-3565886 bp 7 Locus 7: 3741265-3741491 bp 8 Locus 8: 3851784-3852204 bp 9 Locus 9: 4060346-4060638 bp Zoom in on locus 1 x45 Zoom in on locus 2 x12 Zoom in on locus 3 Zoom in on locus 4 x9 Zoom in on locus 5 x3 Zoom in on locus 6 x6 Zoom in on locus 7 x4 Zoom in on locus 8 x7 Zoom in on locus 9 x5 Gene: cd09725:cas2 Type: universal Location: 111873-112163 bp Gene: cd09722:cas1 Type: universal Location: 112374-113381 bp Gene: pfam01930:cas4 Type: Type-I Location: 113407-113901 bp CRISPR array Location: 113986-116921 bp Num of repeats: 45 Spacers: s1-s44 CRISPR array Location: 113986-116921 bp Num of repeats: 45 Spacers: s1-s44 Gene: cd09641:cas3HD Type: Type-I Location: 117111-119669 bp Gene: cd09693:cas5 Type: Type-I Location: 119693-120433 bp Gene: pfam05107:cas7b Type: Type-I Location: 120435-121424 bp Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 121417-123156 bp Gene: cd09652:cas6 Type: other Location: 123168-123863 bp CRISPR array Location: 313293-314043 bp Num of repeats: 12 Spacers: s45-s55 CRISPR array Location: 313293-314043 bp Num of repeats: 12 Spacers: s45-s55 Gene: cd09641:cas3HD Type: Type-I Location: 476011-478419 bp Gene: cd09693:cas5 Type: Type-I Location: 478446-479243 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 479259-480272 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 480292-481767 bp Gene: pfam01881:cas6 Type: other Location: 481772-482509 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 482767-483876 bp CRISPR array Location: 557123-557680 bp Num of repeats: 9 Spacers: s56-s63 CRISPR array Location: 557123-557680 bp Num of repeats: 9 Spacers: s56-s63 CRISPR array Location: 3247510-3247672 bp Num of repeats: 3 Spacers: s64-s65 CRISPR array Location: 3247510-3247672 bp Num of repeats: 3 Spacers: s64-s65 CRISPR array Location: 3565526-3565886 bp Num of repeats: 6 Spacers: s66-s70 CRISPR array Location: 3565526-3565886 bp Num of repeats: 6 Spacers: s66-s70 CRISPR array Location: 3741265-3741491 bp Num of repeats: 4 Spacers: s71-s73 CRISPR array Location: 3741265-3741491 bp Num of repeats: 4 Spacers: s71-s73 CRISPR array Location: 3851784-3852204 bp Num of repeats: 7 Spacers: s74-s79 CRISPR array Location: 3851784-3852204 bp Num of repeats: 7 Spacers: s74-s79 CRISPR array Location: 4060346-4060638 bp Num of repeats: 5 Spacers: s80-s83 CRISPR array Location: 4060346-4060638 bp Num of repeats: 5 Spacers: s80-s83 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 113986-116921 bp]: array | spacers
           [Locus range 313293-314043 bp]: array | spacers
           [Locus range 557123-557680 bp]: array | spacers
           [Locus range 3247510-3247672 bp]: array | spacers
           [Locus range 3565526-3565886 bp]: array | spacers
           [Locus range 3741265-3741491 bp]: array | spacers
           [Locus range 3851784-3852204 bp]: array | spacers
           [Locus range 4060346-4060638 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)