CRISPRone

CRISPRone report for GCA_009903485.1_ASM990348v1

♦ Seq 1: QLNY01000005.1 Clostridioides difficile strain CBA7205 CBA7205_contig5, whole genome shotgun sequence

⇒Summary: seq-len = 4067831 bp; # of CRISPR array = 12; # of cas gene = 16  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1127380-1127673 bp 2 Locus 2: 1151583-1157386 bp 3 Locus 3: 1374232-1374655 bp 4 Locus 4: 1484968-1485522 bp 5 Locus 5: 1566072-1566362 bp 6 Locus 6: 1702962-1704379 bp 7 Locus 7: 2015136-2015363 bp 8 Locus 8: 2367001-2367484 bp 9 Locus 9: 2532825-2542557 bp 10 Locus 10: 2617713-2618272 bp 11 Locus 11: 3152192-3163406 bp Zoom in on locus 1 x5 Zoom in on locus 2 x6 x5 x2 Zoom in on locus 3 x7 Zoom in on locus 4 x9 Zoom in on locus 5 x5 Zoom in on locus 6 x22 Zoom in on locus 7 x4 Zoom in on locus 8 x8 Zoom in on locus 9 Zoom in on locus 10 x9 Zoom in on locus 11 x26 CRISPR array Location: 1127380-1127673 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 1127380-1127673 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 1151583-1151944 bp Num of repeats: 6 Spacers: s5-s9 CRISPR array Location: 1151583-1151944 bp Num of repeats: 6 Spacers: s5-s9 CRISPR array Location: 1154587-1154880 bp Num of repeats: 5 Spacers: s10-s13 CRISPR array Location: 1154587-1154880 bp Num of repeats: 5 Spacers: s10-s13 CRISPR array Location: 1157291-1157386 bp Num of repeats: 2 Spacers: s14-s14 CRISPR array Location: 1157291-1157386 bp Num of repeats: 2 Spacers: s14-s14 CRISPR array Location: 1374232-1374655 bp Num of repeats: 7 Spacers: s15-s20 CRISPR array Location: 1374232-1374655 bp Num of repeats: 7 Spacers: s15-s20 CRISPR array Location: 1484968-1485522 bp Num of repeats: 9 Spacers: s21-s28 CRISPR array Location: 1484968-1485522 bp Num of repeats: 9 Spacers: s21-s28 CRISPR array Location: 1566072-1566362 bp Num of repeats: 5 Spacers: s29-s32 CRISPR array Location: 1566072-1566362 bp Num of repeats: 5 Spacers: s29-s32 CRISPR array Location: 1702962-1704379 bp Num of repeats: 22 Spacers: s33-s53 CRISPR array Location: 1702962-1704379 bp Num of repeats: 22 Spacers: s33-s53 CRISPR array Location: 2015136-2015363 bp Num of repeats: 4 Spacers: s54-s56 CRISPR array Location: 2015136-2015363 bp Num of repeats: 4 Spacers: s54-s56 CRISPR array Location: 2367001-2367484 bp Num of repeats: 8 Spacers: s57-s63 CRISPR array Location: 2367001-2367484 bp Num of repeats: 8 Spacers: s57-s63 Gene: cd09641:cas3HD Type: Type-I Location: 2532825-2535233 bp Gene: cd09693:cas5 Type: Type-I Location: 2535260-2536057 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 2536073-2537086 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 2537106-2538581 bp Gene: pfam01881:cas6 Type: other Location: 2538586-2539323 bp Gene: unk Type: unknown Location: 2539637-2540095 bp Gene: cas14:cas14 Type: Type-V Location: 2540123-2541295 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 2541448-2542557 bp CRISPR array Location: 2617713-2618272 bp Num of repeats: 9 Spacers: s64-s71 CRISPR array Location: 2617713-2618272 bp Num of repeats: 9 Spacers: s64-s71 CRISPR array Location: 3152192-3153868 bp Num of repeats: 26 Spacers: s72-s96 CRISPR array Location: 3152192-3153868 bp Num of repeats: 26 Spacers: s72-s96 Gene: cd09725:cas2 Type: universal Location: 3154052-3154318 bp Gene: cd09722:cas1 Type: universal Location: 3154321-3155301 bp Gene: pfam01930:cas4 Type: Type-I Location: 3155304-3155822 bp Gene: cd09641:cas3HD Type: Type-I Location: 3155870-3158191 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 3158202-3158903 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 3158905-3159819 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 3159821-3161107 bp Gene: unk Type: unknown Location: 3161165-3161671 bp Gene: pfam01881:cas6 Type: other Location: 3161677-3162471 bp Gene: pfam13280:WYL Type: other Location: 3162492-3163406 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1127380-1127673 bp]: array | spacers
           [Locus range 1151583-1151944 bp]: array | spacers
           [Locus range 1154587-1154880 bp]: array | spacers
           [Locus range 1157291-1157386 bp]: array | spacers
           [Locus range 1374232-1374655 bp]: array | spacers
           [Locus range 1484968-1485522 bp]: array | spacers
           [Locus range 1566072-1566362 bp]: array | spacers
           [Locus range 1702962-1704379 bp]: array | spacers
           [Locus range 2015136-2015363 bp]: array | spacers
           [Locus range 2367001-2367484 bp]: array | spacers
           [Locus range 2617713-2618272 bp]: array | spacers
           [Locus range 3152192-3153868 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)