CRISPRone

CRISPRone report for GCA_009903495.1_ASM990349v1

♦ Seq 1: QLNX01000001.1 Clostridioides difficile strain CBA7202 CBA7202_contig1, whole genome shotgun sequence

⇒Summary: seq-len = 4354799 bp; # of CRISPR array = 12; # of cas gene = 27  (type I, III, IV) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1037345-1048605 bp 2 Locus 2: 1657141-1657434 bp 3 Locus 3: 1681329-1687128 bp 4 Locus 4: 1903854-1904277 bp 5 Locus 5: 1916859-1919975 bp 6 Locus 6: 1979977-1982125 bp 7 Locus 7: 2014513-2015067 bp 8 Locus 8: 2095543-2095833 bp 9 Locus 9: 2232255-2233672 bp 10 Locus 10: 2544164-2544389 bp 11 Locus 11: 2895784-2896266 bp 12 Locus 12: 3061505-3071228 bp 13 Locus 13: 3146344-3146903 bp Zoom in on locus 1 x26 Zoom in on locus 2 x5 Zoom in on locus 3 x6 x5 x2 Zoom in on locus 4 x7 Zoom in on locus 5 Zoom in on locus 6 Zoom in on locus 7 x9 Zoom in on locus 8 x5 Zoom in on locus 9 x22 Zoom in on locus 10 x4 Zoom in on locus 11 x8 Zoom in on locus 12 Zoom in on locus 13 x9 Gene: pfam13280:WYL Type: other Location: 1037345-1038046 bp Gene: pfam13280:WYL Type: other Location: 1038169-1038309 bp Gene: pfam01881:cas6 Type: other Location: 1038481-1039122 bp Gene: unk Type: unknown Location: 1039166-1039633 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 1039691-1040977 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 1040979-1041893 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 1041895-1042596 bp Gene: cd09641:cas3HD Type: Type-I Location: 1042607-1043149 bp Gene: COG1203:cas3 Type: Type-I Location: 1043182-1043853 bp Gene: cd09639:cas3 Type: Type-I Location: 1043853-1044926 bp Gene: pfam01930:cas4 Type: Type-I Location: 1044941-1045492 bp Gene: cd09722:cas1 Type: universal Location: 1045495-1046475 bp Gene: cd09725:cas2 Type: universal Location: 1046478-1046744 bp CRISPR array Location: 1046928-1048605 bp Num of repeats: 26 Spacers: s1-s25 CRISPR array Location: 1046928-1048605 bp Num of repeats: 26 Spacers: s1-s25 CRISPR array Location: 1657141-1657434 bp Num of repeats: 5 Spacers: s26-s29 CRISPR array Location: 1657141-1657434 bp Num of repeats: 5 Spacers: s26-s29 CRISPR array Location: 1681329-1681690 bp Num of repeats: 6 Spacers: s30-s34 CRISPR array Location: 1681329-1681690 bp Num of repeats: 6 Spacers: s30-s34 CRISPR array Location: 1684330-1684623 bp Num of repeats: 5 Spacers: s35-s38 CRISPR array Location: 1684330-1684623 bp Num of repeats: 5 Spacers: s35-s38 CRISPR array Location: 1687033-1687128 bp Num of repeats: 2 Spacers: s39-s39 CRISPR array Location: 1687033-1687128 bp Num of repeats: 2 Spacers: s39-s39 CRISPR array Location: 1903854-1904277 bp Num of repeats: 7 Spacers: s40-s45 CRISPR array Location: 1903854-1904277 bp Num of repeats: 7 Spacers: s40-s45 Gene: cd06127:DEDDh Type: Type-I Location: 1916859-1917026 bp Gene: cd06127:DEDDh Type: Type-I Location: 1917092-1917736 bp Gene: COG1199:DinG Type: Subtype-IV-A Location: 1917775-1917951 bp Gene: COG1199:DinG Type: Subtype-IV-A Location: 1918026-1919975 bp Gene: mkCas0136:csm2gr11 Type: Subtype-III-A Location: 1979977-1980435 bp Gene: unk Type: unknown Location: 1980605-1980991 bp Gene: COG2378:WYL Type: other Location: 1981182-1981709 bp Gene: pfam13280:WYL Type: other Location: 1981859-1982125 bp CRISPR array Location: 2014513-2015067 bp Num of repeats: 9 Spacers: s46-s53 CRISPR array Location: 2014513-2015067 bp Num of repeats: 9 Spacers: s46-s53 CRISPR array Location: 2095543-2095833 bp Num of repeats: 5 Spacers: s54-s57 CRISPR array Location: 2095543-2095833 bp Num of repeats: 5 Spacers: s54-s57 CRISPR array Location: 2232255-2233672 bp Num of repeats: 22 Spacers: s58-s78 CRISPR array Location: 2232255-2233672 bp Num of repeats: 22 Spacers: s58-s78 CRISPR array Location: 2544164-2544389 bp Num of repeats: 4 Spacers: s79-s81 CRISPR array Location: 2544164-2544389 bp Num of repeats: 4 Spacers: s79-s81 CRISPR array Location: 2895784-2896266 bp Num of repeats: 8 Spacers: s82-s88 CRISPR array Location: 2895784-2896266 bp Num of repeats: 8 Spacers: s82-s88 Gene: COG1203:cas3 Type: Type-I Location: 3061505-3063559 bp Gene: cd09641:cas3HD Type: Type-I Location: 3063619-3063912 bp Gene: cd09693:cas5 Type: Type-I Location: 3063939-3064736 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 3064752-3065765 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 3065858-3066946 bp Gene: unk Type: unknown Location: 3067000-3067257 bp Gene: pfam01881:cas6 Type: other Location: 3067262-3067999 bp Gene: unk Type: unknown Location: 3068310-3068768 bp Gene: cas14:cas14 Type: Type-V Location: 3068796-3069962 bp Gene: unk Type: unknown Location: 3070120-3070452 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 3070434-3071228 bp CRISPR array Location: 3146344-3146903 bp Num of repeats: 9 Spacers: s89-s96 CRISPR array Location: 3146344-3146903 bp Num of repeats: 9 Spacers: s89-s96 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1046928-1048605 bp]: array | spacers
           [Locus range 1657141-1657434 bp]: array | spacers
           [Locus range 1681329-1681690 bp]: array | spacers
           [Locus range 1684330-1684623 bp]: array | spacers
           [Locus range 1687033-1687128 bp]: array | spacers
           [Locus range 1903854-1904277 bp]: array | spacers
           [Locus range 2014513-2015067 bp]: array | spacers
           [Locus range 2095543-2095833 bp]: array | spacers
           [Locus range 2232255-2233672 bp]: array | spacers
           [Locus range 2544164-2544389 bp]: array | spacers
           [Locus range 2895784-2896266 bp]: array | spacers
           [Locus range 3146344-3146903 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)