CRISPRone

CRISPRone report for GCA_009903525.1_ASM990352v1

♦ Seq 1: QKRD01000001.1 Clostridioides difficile strain CBA7208 CBA7208_contig1, whole genome shotgun sequence

⇒Summary: seq-len = 4080859 bp; # of CRISPR array = 9; # of cas gene = 15  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1305952-1306902 bp 2 Locus 2: 1517871-1519150 bp 3 Locus 3: 1629496-1630512 bp 4 Locus 4: 1711871-1712163 bp 5 Locus 5: 1849119-1850397 bp 6 Locus 6: 2167690-2167982 bp 7 Locus 7: 2527206-2527627 bp 8 Locus 8: 2693158-2701023 bp 9 Locus 9: 2776185-2776679 bp 10 Locus 10: 3276441-3287963 bp Zoom in on locus 1 x15 Zoom in on locus 2 x20 Zoom in on locus 3 x16 Zoom in on locus 4 x5 Zoom in on locus 5 x20 Zoom in on locus 6 x5 Zoom in on locus 7 x7 Zoom in on locus 8 Zoom in on locus 9 x8 Zoom in on locus 10 x31 CRISPR array Location: 1305952-1306902 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 1305952-1306902 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 1517871-1519150 bp Num of repeats: 20 Spacers: s15-s33 CRISPR array Location: 1517871-1519150 bp Num of repeats: 20 Spacers: s15-s33 CRISPR array Location: 1629496-1630512 bp Num of repeats: 16 Spacers: s34-s48 CRISPR array Location: 1629496-1630512 bp Num of repeats: 16 Spacers: s34-s48 CRISPR array Location: 1711871-1712163 bp Num of repeats: 5 Spacers: s49-s52 CRISPR array Location: 1711871-1712163 bp Num of repeats: 5 Spacers: s49-s52 CRISPR array Location: 1849119-1850397 bp Num of repeats: 20 Spacers: s53-s71 CRISPR array Location: 1849119-1850397 bp Num of repeats: 20 Spacers: s53-s71 CRISPR array Location: 2167690-2167982 bp Num of repeats: 5 Spacers: s72-s75 CRISPR array Location: 2167690-2167982 bp Num of repeats: 5 Spacers: s72-s75 CRISPR array Location: 2527206-2527627 bp Num of repeats: 7 Spacers: s76-s81 CRISPR array Location: 2527206-2527627 bp Num of repeats: 7 Spacers: s76-s81 Gene: cd09641:cas3HD Type: Type-I Location: 2693158-2695566 bp Gene: cd09693:cas5 Type: Type-I Location: 2695593-2696390 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 2696406-2697419 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 2697439-2698914 bp Gene: pfam01881:cas6 Type: other Location: 2698919-2699656 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 2699914-2701023 bp CRISPR array Location: 2776185-2776679 bp Num of repeats: 8 Spacers: s82-s88 CRISPR array Location: 2776185-2776679 bp Num of repeats: 8 Spacers: s82-s88 CRISPR array Location: 3276441-3278425 bp Num of repeats: 31 Spacers: s89-s118 CRISPR array Location: 3276441-3278425 bp Num of repeats: 31 Spacers: s89-s118 Gene: cd09725:cas2 Type: universal Location: 3278609-3278875 bp Gene: cd09722:cas1 Type: universal Location: 3278878-3279858 bp Gene: pfam01930:cas4 Type: Type-I Location: 3279861-3280379 bp Gene: cd09641:cas3HD Type: Type-I Location: 3280427-3282748 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 3282759-3283460 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 3283462-3284376 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 3284378-3286228 bp Gene: pfam01881:cas6 Type: other Location: 3286234-3286971 bp Gene: pfam13280:WYL Type: other Location: 3287049-3287963 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1305952-1306902 bp]: array | spacers
           [Locus range 1517871-1519150 bp]: array | spacers
           [Locus range 1629496-1630512 bp]: array | spacers
           [Locus range 1711871-1712163 bp]: array | spacers
           [Locus range 1849119-1850397 bp]: array | spacers
           [Locus range 2167690-2167982 bp]: array | spacers
           [Locus range 2527206-2527627 bp]: array | spacers
           [Locus range 2776185-2776679 bp]: array | spacers
           [Locus range 3276441-3278425 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)