CRISPRone

CRISPRone report for GCA_009903535.1_ASM990353v1

♦ Seq 1: QKRE01000004.1 Clostridioides difficile strain CBA7203 CBA7203_contig4, whole genome shotgun sequence

⇒Summary: seq-len = 4271724 bp; # of CRISPR array = 12; # of cas gene = 16  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 329091-329384 bp 2 Locus 2: 353294-359097 bp 3 Locus 3: 575947-576370 bp 4 Locus 4: 686686-687240 bp 5 Locus 5: 767792-768082 bp 6 Locus 6: 904750-906167 bp 7 Locus 7: 1216929-1217156 bp 8 Locus 8: 1568801-1569284 bp 9 Locus 9: 1734626-1744358 bp 10 Locus 10: 1819516-1820075 bp 11 Locus 11: 2408456-2419670 bp Zoom in on locus 1 x5 Zoom in on locus 2 x6 x5 x2 Zoom in on locus 3 x7 Zoom in on locus 4 x9 Zoom in on locus 5 x5 Zoom in on locus 6 x22 Zoom in on locus 7 x4 Zoom in on locus 8 x8 Zoom in on locus 9 Zoom in on locus 10 x9 Zoom in on locus 11 x26 CRISPR array Location: 329091-329384 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 329091-329384 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 353294-353655 bp Num of repeats: 6 Spacers: s5-s9 CRISPR array Location: 353294-353655 bp Num of repeats: 6 Spacers: s5-s9 CRISPR array Location: 356298-356591 bp Num of repeats: 5 Spacers: s10-s13 CRISPR array Location: 356298-356591 bp Num of repeats: 5 Spacers: s10-s13 CRISPR array Location: 359002-359097 bp Num of repeats: 2 Spacers: s14-s14 CRISPR array Location: 359002-359097 bp Num of repeats: 2 Spacers: s14-s14 CRISPR array Location: 575947-576370 bp Num of repeats: 7 Spacers: s15-s20 CRISPR array Location: 575947-576370 bp Num of repeats: 7 Spacers: s15-s20 CRISPR array Location: 686686-687240 bp Num of repeats: 9 Spacers: s21-s28 CRISPR array Location: 686686-687240 bp Num of repeats: 9 Spacers: s21-s28 CRISPR array Location: 767792-768082 bp Num of repeats: 5 Spacers: s29-s32 CRISPR array Location: 767792-768082 bp Num of repeats: 5 Spacers: s29-s32 CRISPR array Location: 904750-906167 bp Num of repeats: 22 Spacers: s33-s53 CRISPR array Location: 904750-906167 bp Num of repeats: 22 Spacers: s33-s53 CRISPR array Location: 1216929-1217156 bp Num of repeats: 4 Spacers: s54-s56 CRISPR array Location: 1216929-1217156 bp Num of repeats: 4 Spacers: s54-s56 CRISPR array Location: 1568801-1569284 bp Num of repeats: 8 Spacers: s57-s63 CRISPR array Location: 1568801-1569284 bp Num of repeats: 8 Spacers: s57-s63 Gene: cd09641:cas3HD Type: Type-I Location: 1734626-1737034 bp Gene: cd09693:cas5 Type: Type-I Location: 1737061-1737858 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 1737874-1738887 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 1738907-1740382 bp Gene: pfam01881:cas6 Type: other Location: 1740387-1741124 bp Gene: unk Type: unknown Location: 1741438-1741896 bp Gene: cas14:cas14 Type: Type-V Location: 1741924-1743096 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 1743249-1744358 bp CRISPR array Location: 1819516-1820075 bp Num of repeats: 9 Spacers: s64-s71 CRISPR array Location: 1819516-1820075 bp Num of repeats: 9 Spacers: s64-s71 CRISPR array Location: 2408456-2410132 bp Num of repeats: 26 Spacers: s72-s96 CRISPR array Location: 2408456-2410132 bp Num of repeats: 26 Spacers: s72-s96 Gene: cd09725:cas2 Type: universal Location: 2410316-2410582 bp Gene: cd09722:cas1 Type: universal Location: 2410585-2411565 bp Gene: pfam01930:cas4 Type: Type-I Location: 2411568-2412086 bp Gene: cd09641:cas3HD Type: Type-I Location: 2412134-2414455 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 2414466-2415167 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 2415169-2416083 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 2416085-2417371 bp Gene: unk Type: unknown Location: 2417429-2417935 bp Gene: pfam01881:cas6 Type: other Location: 2417941-2418735 bp Gene: pfam13280:WYL Type: other Location: 2418756-2419670 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 329091-329384 bp]: array | spacers
           [Locus range 353294-353655 bp]: array | spacers
           [Locus range 356298-356591 bp]: array | spacers
           [Locus range 359002-359097 bp]: array | spacers
           [Locus range 575947-576370 bp]: array | spacers
           [Locus range 686686-687240 bp]: array | spacers
           [Locus range 767792-768082 bp]: array | spacers
           [Locus range 904750-906167 bp]: array | spacers
           [Locus range 1216929-1217156 bp]: array | spacers
           [Locus range 1568801-1569284 bp]: array | spacers
           [Locus range 1819516-1820075 bp]: array | spacers
           [Locus range 2408456-2410132 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)