CRISPRone

CRISPRone report for GCA_009903545.1_ASM990354v1

♦ Seq 1: QKRF01000001.1 Clostridioides difficile strain CBA7201 CBA7201_contig1, whole genome shotgun sequence

⇒Summary: seq-len = 4302690 bp; # of CRISPR array = 12; # of cas gene = 16  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1344232-1344525 bp 2 Locus 2: 1368435-1374238 bp 3 Locus 3: 1591087-1591510 bp 4 Locus 4: 1701824-1702378 bp 5 Locus 5: 1782930-1783220 bp 6 Locus 6: 1919888-1921305 bp 7 Locus 7: 2232066-2232293 bp 8 Locus 8: 2583938-2584421 bp 9 Locus 9: 2749763-2759495 bp 10 Locus 10: 2834653-2835212 bp 11 Locus 11: 3369139-3380353 bp Zoom in on locus 1 x5 Zoom in on locus 2 x6 x5 x2 Zoom in on locus 3 x7 Zoom in on locus 4 x9 Zoom in on locus 5 x5 Zoom in on locus 6 x22 Zoom in on locus 7 x4 Zoom in on locus 8 x8 Zoom in on locus 9 Zoom in on locus 10 x9 Zoom in on locus 11 x26 CRISPR array Location: 1344232-1344525 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 1344232-1344525 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 1368435-1368796 bp Num of repeats: 6 Spacers: s5-s9 CRISPR array Location: 1368435-1368796 bp Num of repeats: 6 Spacers: s5-s9 CRISPR array Location: 1371439-1371732 bp Num of repeats: 5 Spacers: s10-s13 CRISPR array Location: 1371439-1371732 bp Num of repeats: 5 Spacers: s10-s13 CRISPR array Location: 1374143-1374238 bp Num of repeats: 2 Spacers: s14-s14 CRISPR array Location: 1374143-1374238 bp Num of repeats: 2 Spacers: s14-s14 CRISPR array Location: 1591087-1591510 bp Num of repeats: 7 Spacers: s15-s20 CRISPR array Location: 1591087-1591510 bp Num of repeats: 7 Spacers: s15-s20 CRISPR array Location: 1701824-1702378 bp Num of repeats: 9 Spacers: s21-s28 CRISPR array Location: 1701824-1702378 bp Num of repeats: 9 Spacers: s21-s28 CRISPR array Location: 1782930-1783220 bp Num of repeats: 5 Spacers: s29-s32 CRISPR array Location: 1782930-1783220 bp Num of repeats: 5 Spacers: s29-s32 CRISPR array Location: 1919888-1921305 bp Num of repeats: 22 Spacers: s33-s53 CRISPR array Location: 1919888-1921305 bp Num of repeats: 22 Spacers: s33-s53 CRISPR array Location: 2232066-2232293 bp Num of repeats: 4 Spacers: s54-s56 CRISPR array Location: 2232066-2232293 bp Num of repeats: 4 Spacers: s54-s56 CRISPR array Location: 2583938-2584421 bp Num of repeats: 8 Spacers: s57-s63 CRISPR array Location: 2583938-2584421 bp Num of repeats: 8 Spacers: s57-s63 Gene: cd09641:cas3HD Type: Type-I Location: 2749763-2752171 bp Gene: cd09693:cas5 Type: Type-I Location: 2752198-2752995 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 2753011-2754024 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 2754044-2755519 bp Gene: pfam01881:cas6 Type: other Location: 2755524-2756261 bp Gene: unk Type: unknown Location: 2756575-2757033 bp Gene: cas14:cas14 Type: Type-V Location: 2757061-2758233 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 2758386-2759495 bp CRISPR array Location: 2834653-2835212 bp Num of repeats: 9 Spacers: s64-s71 CRISPR array Location: 2834653-2835212 bp Num of repeats: 9 Spacers: s64-s71 CRISPR array Location: 3369139-3370815 bp Num of repeats: 26 Spacers: s72-s96 CRISPR array Location: 3369139-3370815 bp Num of repeats: 26 Spacers: s72-s96 Gene: cd09725:cas2 Type: universal Location: 3370999-3371265 bp Gene: cd09722:cas1 Type: universal Location: 3371268-3372248 bp Gene: pfam01930:cas4 Type: Type-I Location: 3372251-3372769 bp Gene: cd09641:cas3HD Type: Type-I Location: 3372817-3375138 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 3375149-3375850 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 3375852-3376766 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 3376768-3378054 bp Gene: unk Type: unknown Location: 3378112-3378618 bp Gene: pfam01881:cas6 Type: other Location: 3378624-3379418 bp Gene: pfam13280:WYL Type: other Location: 3379439-3380353 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1344232-1344525 bp]: array | spacers
           [Locus range 1368435-1368796 bp]: array | spacers
           [Locus range 1371439-1371732 bp]: array | spacers
           [Locus range 1374143-1374238 bp]: array | spacers
           [Locus range 1591087-1591510 bp]: array | spacers
           [Locus range 1701824-1702378 bp]: array | spacers
           [Locus range 1782930-1783220 bp]: array | spacers
           [Locus range 1919888-1921305 bp]: array | spacers
           [Locus range 2232066-2232293 bp]: array | spacers
           [Locus range 2583938-2584421 bp]: array | spacers
           [Locus range 2834653-2835212 bp]: array | spacers
           [Locus range 3369139-3370815 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)