CRISPRone

CRISPRone report for GCA_009916345.1_CLC_Genomics_Workbench_10

♦ Seq 1: SDSO01000025.1 Pseudomonas aeruginosa strain BCW_7428 BCW_7428_1_contig_25, whole genome shotgun sequence

⇒Summary: seq-len = 50325 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 37498-49137 bp Zoom in on locus 1 x24 x28 CRISPR array Location: 37498-38906 bp Num of repeats: 24 Spacers: s1-s23 CRISPR array Location: 37498-38906 bp Num of repeats: 24 Spacers: s1-s23 Gene: cd09739:cas6f Type: other Location: 39090-39653 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 39657-40685 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 40696-41679 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 41666-42970 bp Gene: COG1203:cas3 Type: Type-I Location: 43028-46258 bp Gene: cd09718:cas1 Type: universal Location: 46255-47229 bp CRISPR array Location: 47490-49137 bp Num of repeats: 28 Spacers: s24-s50 CRISPR array Location: 47490-49137 bp Num of repeats: 28 Spacers: s24-s50 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 37498-38906 bp]: array | spacers
           [Locus range 47490-49137 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)