CRISPRone

CRISPRone report for GCA_009917325.1_ASM991732v1

♦ Seq 1: QWLH01000038.1 Clostridioides difficile strain J11 Scaffold32_1, whole genome shotgun sequence

⇒Summary: seq-len = 13519 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3016-3771 bp Zoom in on locus 1 x12 CRISPR array Location: 3016-3771 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 3016-3771 bp Num of repeats: 12 Spacers: s1-s11 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3016-3771 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: QWLH01000003.1 Clostridioides difficile strain J11 Scaffold3_1, whole genome shotgun sequence

⇒Summary: seq-len = 448525 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 91927-92089 bp 2 Locus 2: 409962-410322 bp Zoom in on locus 1 x3 Zoom in on locus 2 x6 CRISPR array Location: 91927-92089 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 91927-92089 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 409962-410322 bp Num of repeats: 6 Spacers: s3-s7 CRISPR array Location: 409962-410322 bp Num of repeats: 6 Spacers: s3-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 91927-92089 bp]: array | spacers
           [Locus range 409962-410322 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: QWLH01000001.1 Clostridioides difficile strain J11 Scaffold1_1, whole genome shotgun sequence

⇒Summary: seq-len = 489260 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 189526-189819 bp 2 Locus 2: 397961-398382 bp Zoom in on locus 1 x5 Zoom in on locus 2 x7 CRISPR array Location: 189526-189819 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 189526-189819 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 397961-398382 bp Num of repeats: 7 Spacers: s5-s10 CRISPR array Location: 397961-398382 bp Num of repeats: 7 Spacers: s5-s10 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 189526-189819 bp]: array | spacers
           [Locus range 397961-398382 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: QWLH01000039.1 Clostridioides difficile strain J11 Scaffold33_1, whole genome shotgun sequence

⇒Summary: seq-len = 13358 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3241-6855 bp Zoom in on locus 1 x8 x13 CRISPR array Location: 3241-3729 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 3241-3729 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 6032-6855 bp Num of repeats: 13 Spacers: s8-s19 CRISPR array Location: 6032-6855 bp Num of repeats: 13 Spacers: s8-s19 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3241-3729 bp]: array | spacers
           [Locus range 6032-6855 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: QWLH01000002.1 Clostridioides difficile strain J11 Scaffold2_1, whole genome shotgun sequence

⇒Summary: seq-len = 485291 bp; # of CRISPR array = 1; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 244614-245172 bp 2 Locus 2: 318419-326284 bp Zoom in on locus 1 x9 Zoom in on locus 2 CRISPR array Location: 244614-245172 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 244614-245172 bp Num of repeats: 9 Spacers: s1-s8 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 318419-319528 bp Gene: pfam01881:cas6 Type: other Location: 319786-320523 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 320528-322003 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 322023-323036 bp Gene: cd09693:cas5 Type: Type-I Location: 323052-323849 bp Gene: cd09641:cas3HD Type: Type-I Location: 323876-326284 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 244614-245172 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: QWLH01000016.1 Clostridioides difficile strain J11 Scaffold14_1, whole genome shotgun sequence

⇒Summary: seq-len = 96045 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 78123-78349 bp Zoom in on locus 1 x4 CRISPR array Location: 78123-78349 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 78123-78349 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 78123-78349 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: QWLH01000006.1 Clostridioides difficile strain J11 Scaffold5_2, whole genome shotgun sequence

⇒Summary: seq-len = 268776 bp; # of CRISPR array = 2; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 63332-75388 bp 2 Locus 2: 264891-265905 bp Zoom in on locus 1 x46 Zoom in on locus 2 x16 Gene: cd09725:cas2 Type: universal Location: 63332-63622 bp Gene: cd09722:cas1 Type: universal Location: 63833-64840 bp Gene: pfam01930:cas4 Type: Type-I Location: 64866-65360 bp CRISPR array Location: 65445-68446 bp Num of repeats: 46 Spacers: s1-s45 CRISPR array Location: 65445-68446 bp Num of repeats: 46 Spacers: s1-s45 Gene: cd09641:cas3HD Type: Type-I Location: 68636-71194 bp Gene: cd09693:cas5 Type: Type-I Location: 71218-71958 bp Gene: pfam05107:cas7b Type: Type-I Location: 71960-72949 bp Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 72942-74681 bp Gene: cd09652:cas6 Type: other Location: 74693-75388 bp CRISPR array Location: 264891-265905 bp Num of repeats: 16 Spacers: s46-s60 CRISPR array Location: 264891-265905 bp Num of repeats: 16 Spacers: s46-s60 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 65445-68446 bp]: array | spacers
           [Locus range 264891-265905 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)