CRISPRone

CRISPRone report for GCA_011602815.1_ASM1160281v1

♦ Seq 1: JAAPAT010000002.1 Clostridioides difficile strain CD507A NODE_2_length_562155_cov_182.656147, whole genome shotgun sequence

⇒Summary: seq-len = 562155 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 299137-309335 bp Zoom in on locus 1 x11 Gene: pfam13280:WYL Type: other Location: 299137-300024 bp Gene: pfam01881:cas6 Type: other Location: 300102-300839 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 300845-302695 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 302697-303611 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 303613-304314 bp Gene: COG1203:cas3 Type: Type-I Location: 304325-306646 bp Gene: pfam01930:cas4 Type: Type-I Location: 306661-307212 bp Gene: cd09722:cas1 Type: universal Location: 307215-308195 bp Gene: cd09725:cas2 Type: universal Location: 308198-308464 bp CRISPR array Location: 308648-309335 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 308648-309335 bp Num of repeats: 11 Spacers: s1-s10 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 308648-309335 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JAAPAT010000007.1 Clostridioides difficile strain CD507A NODE_7_length_205873_cov_167.299544, whole genome shotgun sequence

⇒Summary: seq-len = 205873 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 15800-16217 bp Zoom in on locus 1 x7 CRISPR array Location: 15800-16217 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 15800-16217 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 15800-16217 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: JAAPAT010000016.1 Clostridioides difficile strain CD507A NODE_16_length_19549_cov_146.268407, whole genome shotgun sequence

⇒Summary: seq-len = 19549 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 8656-8816 bp Zoom in on locus 1 x3 CRISPR array Location: 8656-8816 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 8656-8816 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 8656-8816 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: JAAPAT010000001.1 Clostridioides difficile strain CD507A NODE_1_length_1308625_cov_156.128728, whole genome shotgun sequence

⇒Summary: seq-len = 1308625 bp; # of CRISPR array = 5; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 243785-243879 bp 2 Locus 2: 317158-325467 bp 3 Locus 3: 488844-489599 bp 4 Locus 4: 790735-791819 bp 5 Locus 5: 866691-867050 bp 6 Locus 6: 1183641-1185045 bp Zoom in on locus 1 x2 Zoom in on locus 2 Zoom in on locus 3 x12 Zoom in on locus 4 x17 Zoom in on locus 5 x6 Zoom in on locus 6 x22 CRISPR array Location: 243785-243879 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 243785-243879 bp Num of repeats: 2 Spacers: s1-s1 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 317158-318267 bp Gene: unk Type: unknown Location: 318701-318877 bp Gene: pfam01881:cas6 Type: other Location: 318978-319715 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 319720-321186 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 321206-322219 bp Gene: cd09693:cas5 Type: Type-I Location: 322235-323032 bp Gene: cd09641:cas3HD Type: Type-I Location: 323059-325467 bp CRISPR array Location: 488844-489599 bp Num of repeats: 12 Spacers: s2-s12 CRISPR array Location: 488844-489599 bp Num of repeats: 12 Spacers: s2-s12 CRISPR array Location: 790735-791819 bp Num of repeats: 17 Spacers: s13-s28 CRISPR array Location: 790735-791819 bp Num of repeats: 17 Spacers: s13-s28 CRISPR array Location: 866691-867050 bp Num of repeats: 6 Spacers: s29-s33 CRISPR array Location: 866691-867050 bp Num of repeats: 6 Spacers: s29-s33 CRISPR array Location: 1183641-1185045 bp Num of repeats: 22 Spacers: s34-s54 CRISPR array Location: 1183641-1185045 bp Num of repeats: 22 Spacers: s34-s54 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 243785-243879 bp]: array | spacers
           [Locus range 488844-489599 bp]: array | spacers
           [Locus range 790735-791819 bp]: array | spacers
           [Locus range 866691-867050 bp]: array | spacers
           [Locus range 1183641-1185045 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: JAAPAT010000003.1 Clostridioides difficile strain CD507A NODE_3_length_402523_cov_156.511951, whole genome shotgun sequence

⇒Summary: seq-len = 402523 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 78276-78899 bp 2 Locus 2: 189257-189679 bp Zoom in on locus 1 x10 Zoom in on locus 2 x7 CRISPR array Location: 78276-78899 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 78276-78899 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 189257-189679 bp Num of repeats: 7 Spacers: s10-s15 CRISPR array Location: 189257-189679 bp Num of repeats: 7 Spacers: s10-s15 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 78276-78899 bp]: array | spacers
           [Locus range 189257-189679 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)