CRISPRone

CRISPRone report for GCA_011683115.1_ASM1168311v1

♦ Seq 1: VCOT01000024.1 Pseudomonas aeruginosa strain NSPa12 Scaffold24, whole genome shotgun sequence

⇒Summary: seq-len = 91703 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 59436-70285 bp Zoom in on locus 1 x29 x10 CRISPR array Location: 59436-61144 bp Num of repeats: 29 Spacers: s1-s28 CRISPR array Location: 59436-61144 bp Num of repeats: 29 Spacers: s1-s28 Gene: cd09739:cas6f Type: other Location: 61327-61890 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 61894-62922 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 62933-63916 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 63903-65207 bp Gene: COG1203:cas3 Type: Type-I Location: 65265-68495 bp Gene: cd09718:cas1 Type: universal Location: 68492-69466 bp CRISPR array Location: 69718-70285 bp Num of repeats: 10 Spacers: s29-s37 CRISPR array Location: 69718-70285 bp Num of repeats: 10 Spacers: s29-s37 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 59436-61144 bp]: array | spacers
           [Locus range 69718-70285 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: VCOT01000001.1 Pseudomonas aeruginosa strain NSPa12 Scaffold1, whole genome shotgun sequence

⇒Summary: seq-len = 748575 bp; # of CRISPR array = 0; # of cas gene = 3  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 590416-601656 bp Zoom in on locus 1 Gene: cd09710:cas3 Type: Subtype-I-D Location: 590416-593223 bp Gene: unk Type: unknown Location: 593226-595811 bp Gene: unk Type: unknown Location: 596512-600252 bp Gene: mkCas0115:csx3 Type: other Location: 600276-600737 bp Gene: pfam13280:WYL Type: other Location: 600742-601656 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)