CRISPRone

CRISPRone report for GCA_011881435.1_ASM1188143v1

♦ Seq 1: JAATNN010000305.1 Clostridioides difficile strain HC51 NODE_414_length_9353_cov_24.079226, whole genome shotgun sequence

⇒Summary: seq-len = 9443 bp; # of CRISPR array = 1; # of cas gene = 1  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2-2001 bp Zoom in on locus 1 x24 Gene: cd09725:cas2 Type: universal Location: 2-277 bp CRISPR array Location: 461-2001 bp Num of repeats: 24 Spacers: s1-s23 CRISPR array Location: 461-2001 bp Num of repeats: 24 Spacers: s1-s23 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 461-2001 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JAATNN010000230.1 Clostridioides difficile strain HC51 NODE_335_length_14360_cov_31.368525, whole genome shotgun sequence

⇒Summary: seq-len = 14450 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 9985-10543 bp Zoom in on locus 1 x9 CRISPR array Location: 9985-10543 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 9985-10543 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 9985-10543 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: JAATNN010000159.1 Clostridioides difficile strain HC51 NODE_254_length_6342_cov_17.625355, whole genome shotgun sequence

⇒Summary: seq-len = 6432 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2887-3902 bp Zoom in on locus 1 x16 CRISPR array Location: 2887-3902 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 2887-3902 bp Num of repeats: 16 Spacers: s1-s15 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 2887-3902 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: JAATNN010000512.1 Clostridioides difficile strain HC51 NODE_627_length_6453_cov_20.193863, whole genome shotgun sequence

⇒Summary: seq-len = 6543 bp; # of CRISPR array = 0; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 70-6541 bp Zoom in on locus 1 Gene: pfam01881:cas6 Type: other Location: 70-807 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 812-2287 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 2307-3320 bp Gene: cd09693:cas5 Type: Type-I Location: 3336-4133 bp Gene: cd09641:cas3HD Type: Type-I Location: 4160-6541 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: JAATNN010000438.1 Clostridioides difficile strain HC51 NODE_549_length_12755_cov_29.393101, whole genome shotgun sequence

⇒Summary: seq-len = 12845 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 561-1508 bp Zoom in on locus 1 x15 CRISPR array Location: 561-1508 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 561-1508 bp Num of repeats: 15 Spacers: s1-s14 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 561-1508 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: JAATNN010000335.1 Clostridioides difficile strain HC51 NODE_446_length_3423_cov_15.270231, whole genome shotgun sequence

⇒Summary: seq-len = 3513 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2843-3403 bp Zoom in on locus 1 x9 CRISPR array Location: 2843-3403 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 2843-3403 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 2843-3403 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: JAATNN010000576.1 Clostridioides difficile strain HC51 NODE_694_length_9130_cov_18.414568, whole genome shotgun sequence

⇒Summary: seq-len = 9220 bp; # of CRISPR array = 0; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 187-9218 bp Zoom in on locus 1 Gene: pfam13280:WYL Type: other Location: 187-1074 bp Gene: pfam01881:cas6 Type: other Location: 1152-1889 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 1895-3772 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 3774-4688 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 4690-5391 bp Gene: COG1203:cas3 Type: Type-I Location: 5402-7723 bp Gene: pfam01930:cas4 Type: Type-I Location: 7738-8289 bp Gene: cd09722:cas1 Type: universal Location: 8292-9218 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: JAATNN010000304.1 Clostridioides difficile strain HC51 NODE_413_length_584_cov_17.393835, whole genome shotgun sequence

⇒Summary: seq-len = 674 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 36-261 bp Zoom in on locus 1 x4 CRISPR array Location: 36-261 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 36-261 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 36-261 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)