CRISPRone

CRISPRone report for GCA_011882305.1_ASM1188230v1

♦ Seq 1: JAATNM010000537.1 Clostridioides difficile strain HC48 NODE_703_length_3583_cov_15.083729, whole genome shotgun sequence

⇒Summary: seq-len = 3689 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2059-3007 bp Zoom in on locus 1 x15 CRISPR array Location: 2059-3007 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 2059-3007 bp Num of repeats: 15 Spacers: s1-s14 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 2059-3007 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JAATNM010000677.1 Clostridioides difficile strain HC48 NODE_848_length_4402_cov_11.046570, whole genome shotgun sequence

⇒Summary: seq-len = 4508 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2827-2986 bp Zoom in on locus 1 x3 CRISPR array Location: 2827-2986 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 2827-2986 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 2827-2986 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: JAATNM010000377.1 Clostridioides difficile strain HC48 NODE_534_length_5041_cov_23.088871, whole genome shotgun sequence

⇒Summary: seq-len = 5147 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 632-1190 bp Zoom in on locus 1 x9 CRISPR array Location: 632-1190 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 632-1190 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 632-1190 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: JAATNM010000827.1 Clostridioides difficile strain HC48 NODE_999_length_3576_cov_16.027124, whole genome shotgun sequence

⇒Summary: seq-len = 3682 bp; # of CRISPR array = 0; # of cas gene = 4  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2-3679 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 2-505 bp Gene: cd09693:cas5 Type: Type-I Location: 532-1329 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 1345-2358 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 2378-3679 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: JAATNM010000792.1 Clostridioides difficile strain HC48 NODE_964_length_2034_cov_13.066863, whole genome shotgun sequence

⇒Summary: seq-len = 2140 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 46-995 bp Zoom in on locus 1 x15 CRISPR array Location: 46-995 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 46-995 bp Num of repeats: 15 Spacers: s1-s14 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 46-995 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: JAATNM010000446.1 Clostridioides difficile strain HC48 NODE_605_length_3411_cov_23.089417, whole genome shotgun sequence

⇒Summary: seq-len = 3517 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3174-3467 bp Zoom in on locus 1 x5 CRISPR array Location: 3174-3467 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 3174-3467 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3174-3467 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: JAATNM010000962.1 Clostridioides difficile strain HC48 NODE_1136_length_2582_cov_12.646010, whole genome shotgun sequence

⇒Summary: seq-len = 2688 bp; # of CRISPR array = 0; # of cas gene = 3  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1-2687 bp Zoom in on locus 1 Gene: cd09754:cas8b2 Type: Subtype-I-B Location: 1-1164 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 1166-2080 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 2082-2687 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: JAATNM010000501.1 Clostridioides difficile strain HC48 NODE_663_length_1304_cov_9.769938, whole genome shotgun sequence

⇒Summary: seq-len = 1410 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 570-1390 bp Zoom in on locus 1 x13 CRISPR array Location: 570-1390 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 570-1390 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 570-1390 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: JAATNM010000791.1 Clostridioides difficile strain HC48 NODE_963_length_2103_cov_21.411318, whole genome shotgun sequence

⇒Summary: seq-len = 2209 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-154 bp Zoom in on locus 1 x3 CRISPR array Location: 0-154 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 0-154 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 0-154 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 10: JAATNM010000448.1 Clostridioides difficile strain HC48 NODE_607_length_5415_cov_20.060389, whole genome shotgun sequence

⇒Summary: seq-len = 5521 bp; # of CRISPR array = 1; # of cas gene = 4  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1-5297 bp Zoom in on locus 1 x24 Gene: COG1203:cas3 Type: Type-I Location: 1-1755 bp Gene: pfam01930:cas4 Type: Type-I Location: 1770-2321 bp Gene: cd09722:cas1 Type: universal Location: 2324-3304 bp Gene: cd09725:cas2 Type: universal Location: 3307-3573 bp CRISPR array Location: 3757-5297 bp Num of repeats: 24 Spacers: s1-s23 CRISPR array Location: 3757-5297 bp Num of repeats: 24 Spacers: s1-s23 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 3757-5297 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 11: JAATNM010000500.1 Clostridioides difficile strain HC48 NODE_662_length_678_cov_17.382006, whole genome shotgun sequence

⇒Summary: seq-len = 784 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 420-715 bp Zoom in on locus 1 x5 CRISPR array Location: 420-715 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 420-715 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 420-715 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)