CRISPRone

CRISPRone report for GCA_012030095.1_ASM1203009v1

♦ Seq 1: JAAUXK010000116.1 Clostridioides difficile strain HU41 NODE_116_length_8559_cov_18.1767, whole genome shotgun sequence

⇒Summary: seq-len = 8559 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 7153-7639 bp Zoom in on locus 1 x8 CRISPR array Location: 7153-7639 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 7153-7639 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 7153-7639 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JAAUXK010000016.1 Clostridioides difficile strain HU41 NODE_16_length_66186_cov_18.8292, whole genome shotgun sequence

⇒Summary: seq-len = 66186 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3567-3662 bp Zoom in on locus 1 x2 CRISPR array Location: 3567-3662 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 3567-3662 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3567-3662 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: JAAUXK010000035.1 Clostridioides difficile strain HU41 NODE_35_length_36133_cov_19.0951, whole genome shotgun sequence

⇒Summary: seq-len = 36133 bp; # of CRISPR array = 1; # of cas gene = 10  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 4038-25057 bp Zoom in on locus 1 x15 Gene: COG2378:WYL Type: other Location: 4038-4937 bp Gene: pfam13280:WYL Type: other Location: 14545-15459 bp Gene: pfam01881:cas6 Type: other Location: 15537-16274 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 16319-18151 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 18153-19067 bp Gene: cd09693:cas5 Type: Type-I Location: 19069-19803 bp Gene: COG1203:cas3 Type: Type-I Location: 19784-22105 bp Gene: pfam01930:cas4 Type: Type-I Location: 22120-22671 bp Gene: cd09722:cas1 Type: universal Location: 22674-23654 bp Gene: cd09725:cas2 Type: universal Location: 23658-23924 bp CRISPR array Location: 24108-25057 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 24108-25057 bp Num of repeats: 15 Spacers: s1-s14 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 24108-25057 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: JAAUXK010000011.1 Clostridioides difficile strain HU41 NODE_11_length_76288_cov_28.0698, whole genome shotgun sequence

⇒Summary: seq-len = 76288 bp; # of CRISPR array = 1; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 24572-33350 bp Zoom in on locus 1 x19 Gene: COG2378:WYL Type: other Location: 24572-25534 bp CRISPR array Location: 25940-27147 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 25940-27147 bp Num of repeats: 19 Spacers: s1-s18 Gene: COG1203:cas3 Type: Type-I Location: 27714-29696 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 29707-30777 bp Gene: cls000029:cas8b2 Type: Subtype-I-B Location: 30798-31946 bp Gene: pfam01881:cas6 Type: other Location: 31948-32712 bp Gene: cd09693:cas5 Type: Type-I Location: 32703-33350 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 25940-27147 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: JAAUXK010000106.1 Clostridioides difficile strain HU41 NODE_106_length_10581_cov_8.94739, whole genome shotgun sequence

⇒Summary: seq-len = 10581 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 150-2203 bp Zoom in on locus 1 Gene: COG0640:csa3 Type: Subtype-I-A Location: 150-536 bp Gene: cd09718:cas1 Type: universal Location: 548-2203 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: JAAUXK010000023.1 Clostridioides difficile strain HU41 NODE_23_length_49183_cov_23.0962, whole genome shotgun sequence

⇒Summary: seq-len = 49183 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 38607-39553 bp Zoom in on locus 1 x15 CRISPR array Location: 38607-39553 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 38607-39553 bp Num of repeats: 15 Spacers: s1-s14 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 38607-39553 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)