CRISPRone

CRISPRone report for GCA_012030175.1_ASM1203017v1

♦ Seq 1: JAAUXG010000033.1 Clostridioides difficile strain HC129 NODE_33_length_34108_cov_14.2442, whole genome shotgun sequence

⇒Summary: seq-len = 34108 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR)

⇒Cas loci & CRISPR arrays: gff file

⇒CRISPR arrays :
           [Locus range 5539-5633 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JAAUXG010000094.1 Clostridioides difficile strain HC129 NODE_94_length_15250_cov_26.4657, whole genome shotgun sequence

⇒Summary: seq-len = 15250 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) 

⇒Cas loci & CRISPR arrays: gff file

⇒Predicted cas genes: protein | gene

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: JAAUXG010000060.1 Clostridioides difficile strain HC129 NODE_60_length_22980_cov_22.3171, whole genome shotgun sequence

⇒Summary: seq-len = 22980 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR)

⇒Cas loci & CRISPR arrays: gff file

⇒CRISPR arrays :
           [Locus range 1434-1593 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: JAAUXG010000155.1 Clostridioides difficile strain HC129 NODE_155_length_8100_cov_12.8292, whole genome shotgun sequence

⇒Summary: seq-len = 8100 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR)

⇒Cas loci & CRISPR arrays: gff file

⇒CRISPR arrays :
           [Locus range 4813-5170 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: JAAUXG010000223.1 Clostridioides difficile strain HC129 NODE_223_length_3194_cov_16.6893, whole genome shotgun sequence

⇒Summary: seq-len = 3189 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR)

⇒Cas loci & CRISPR arrays: gff file

⇒CRISPR arrays :
           [Locus range 2254-2744 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: JAAUXG010000077.1 Clostridioides difficile strain HC129 NODE_77_length_18847_cov_9.87089, whole genome shotgun sequence

⇒Summary: seq-len = 18847 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) 

⇒Cas loci & CRISPR arrays: gff file

⇒Predicted cas genes: protein | gene

⇒CRISPR arrays :
           [Locus range 623-3217 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: JAAUXG010000007.1 Clostridioides difficile strain HC129 NODE_7_length_56408_cov_18.6953, whole genome shotgun sequence

⇒Summary: seq-len = 56408 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR)

⇒Cas loci & CRISPR arrays: gff file

⇒CRISPR arrays :
           [Locus range 50346-50572 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: JAAUXG010000102.1 Clostridioides difficile strain HC129 NODE_102_length_14470_cov_26.7263, whole genome shotgun sequence

⇒Summary: seq-len = 14470 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR)

⇒Cas loci & CRISPR arrays: gff file

⇒CRISPR arrays :
           [Locus range 12477-13432 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: JAAUXG010000110.1 Clostridioides difficile strain HC129 NODE_110_length_13158_cov_31.2917, whole genome shotgun sequence

⇒Summary: seq-len = 13158 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR)

⇒Cas loci & CRISPR arrays: gff file

⇒CRISPR arrays :
           [Locus range 1953-2180 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 10: JAAUXG010000127.1 Clostridioides difficile strain HC129 NODE_127_length_10696_cov_13.9237, whole genome shotgun sequence

⇒Summary: seq-len = 10696 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR)

⇒Cas loci & CRISPR arrays: gff file

⇒CRISPR arrays :
           [Locus range 6233-6591 bp]: array | spacers
           [Locus range 6652-6813 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 11: JAAUXG010000153.1 Clostridioides difficile strain HC129 NODE_153_length_8218_cov_14.6489, whole genome shotgun sequence

⇒Summary: seq-len = 8218 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR)

⇒Cas loci & CRISPR arrays: gff file

⇒CRISPR arrays :
           [Locus range 6506-7717 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 12: JAAUXG010000036.1 Clostridioides difficile strain HC129 NODE_36_length_32136_cov_19.6548, whole genome shotgun sequence

⇒Summary: seq-len = 32136 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) 

⇒Cas loci & CRISPR arrays: gff file

⇒Predicted cas genes: protein | gene

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)