CRISPRone

CRISPRone report for GCA_012839935.1_ASM1283993v1

♦ Seq 1: DUMK01000044.1 TPA_asm: Pseudomonas aeruginosa isolate AS04akNAM_52 33570_AS04, whole genome shotgun sequence

⇒Summary: seq-len = 49210 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 388-10886 bp Zoom in on locus 1 x11 x22 CRISPR array Location: 388-1016 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 388-1016 bp Num of repeats: 11 Spacers: s1-s10 Gene: cd09718:cas1 Type: universal Location: 1276-2250 bp Gene: COG1203:cas3 Type: Type-I Location: 2247-5477 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 5535-6839 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 6826-7809 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 7820-8848 bp Gene: cd09739:cas6f Type: other Location: 8852-9415 bp CRISPR array Location: 9598-10886 bp Num of repeats: 22 Spacers: s11-s31 CRISPR array Location: 9598-10886 bp Num of repeats: 22 Spacers: s11-s31 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 388-1016 bp]: array | spacers
           [Locus range 9598-10886 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: DUMK01000077.1 TPA_asm: Pseudomonas aeruginosa isolate AS04akNAM_52 52505_AS04, whole genome shotgun sequence

⇒Summary: seq-len = 53527 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 388-1256 bp Zoom in on locus 1 x15 CRISPR array Location: 388-1256 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 388-1256 bp Num of repeats: 15 Spacers: s1-s14 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 388-1256 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)