CRISPRone

CRISPRone report for GCA_012952655.1_ASM1295265v1

♦ Seq 1: JAATIE010000001.1 Clostridioides difficile strain CD07814, whole genome shotgun sequence

⇒Summary: seq-len = 4180658 bp; # of CRISPR array = 6; # of cas gene = 25  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1395125-1395287 bp 2 Locus 2: 1916877-1918026 bp 3 Locus 3: 2243547-2255859 bp 4 Locus 4: 2293366-2294179 bp 5 Locus 5: 2402185-2413838 bp 6 Locus 6: 2765063-2773389 bp 7 Locus 7: 3389769-3401467 bp Zoom in on locus 1 x3 Zoom in on locus 2 x18 Zoom in on locus 3 x44 Zoom in on locus 4 x13 Zoom in on locus 5 x40 Zoom in on locus 6 Zoom in on locus 7 x33 CRISPR array Location: 1395125-1395287 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 1395125-1395287 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 1916877-1918026 bp Num of repeats: 18 Spacers: s3-s19 CRISPR array Location: 1916877-1918026 bp Num of repeats: 18 Spacers: s3-s19 CRISPR array Location: 2243547-2246411 bp Num of repeats: 44 Spacers: s20-s62 CRISPR array Location: 2243547-2246411 bp Num of repeats: 44 Spacers: s20-s62 Gene: cd09718:cas1 Type: universal Location: 2253815-2255470 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 2255482-2255859 bp CRISPR array Location: 2293366-2294179 bp Num of repeats: 13 Spacers: s63-s74 CRISPR array Location: 2293366-2294179 bp Num of repeats: 13 Spacers: s63-s74 Gene: cd09725:cas2 Type: universal Location: 2402185-2402391 bp Gene: cd09722:cas1 Type: universal Location: 2402688-2403695 bp Gene: pfam01930:cas4 Type: Type-I Location: 2403721-2404215 bp CRISPR array Location: 2404300-2406898 bp Num of repeats: 40 Spacers: s75-s113 CRISPR array Location: 2404300-2406898 bp Num of repeats: 40 Spacers: s75-s113 Gene: unk Type: unknown Location: 2404923-2405051 bp Gene: cd09641:cas3HD Type: Type-I Location: 2407088-2409646 bp Gene: cd09693:cas5 Type: Type-I Location: 2410028-2410408 bp Gene: pfam05107:cas7b Type: Type-I Location: 2410410-2411399 bp Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 2411392-2413131 bp Gene: cd09652:cas6 Type: other Location: 2413143-2413838 bp Gene: cd09641:cas3HD Type: Type-I Location: 2765063-2767471 bp Gene: cd09693:cas5 Type: Type-I Location: 2767498-2768295 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 2768311-2769324 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 2769343-2770809 bp Gene: pfam01881:cas6 Type: other Location: 2770814-2771551 bp Gene: unk Type: unknown Location: 2771652-2771828 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 2772280-2773389 bp CRISPR array Location: 3389769-3391890 bp Num of repeats: 33 Spacers: s114-s145 CRISPR array Location: 3389769-3391890 bp Num of repeats: 33 Spacers: s114-s145 Gene: cd09725:cas2 Type: universal Location: 3392074-3392340 bp Gene: cd09722:cas1 Type: universal Location: 3392343-3393323 bp Gene: pfam01930:cas4 Type: Type-I Location: 3393326-3393844 bp Gene: COG1203:cas3 Type: Type-I Location: 3393892-3396213 bp Gene: cd09693:cas5 Type: Type-I Location: 3396224-3396925 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 3396927-3397841 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 3397843-3399693 bp Gene: pfam01881:cas6 Type: other Location: 3399699-3400493 bp Gene: pfam13280:WYL Type: other Location: 3400514-3401467 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1395125-1395287 bp]: array | spacers
           [Locus range 1916877-1918026 bp]: array | spacers
           [Locus range 2243547-2246411 bp]: array | spacers
           [Locus range 2293366-2294179 bp]: array | spacers
           [Locus range 2404300-2406898 bp]: array | spacers
           [Locus range 3389769-3391890 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)