CRISPRone

CRISPRone report for GCA_012955965.1_ASM1295596v1

♦ Seq 1: JABBZI010000001.1 Clostridioides difficile strain HC132 NODE_1_length_291280_cov_32.0586, whole genome shotgun sequence

⇒Summary: seq-len = 291280 bp; # of CRISPR array = 1; # of cas gene = 10  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 229123-251251 bp Zoom in on locus 1 x32 CRISPR array Location: 229123-231182 bp Num of repeats: 32 Spacers: s1-s31 CRISPR array Location: 229123-231182 bp Num of repeats: 32 Spacers: s1-s31 Gene: cd09725:cas2 Type: universal Location: 231366-231632 bp Gene: cd09722:cas1 Type: universal Location: 231636-232616 bp Gene: pfam01930:cas4 Type: Type-I Location: 232619-233137 bp Gene: COG1203:cas3 Type: Type-I Location: 233185-235512 bp Gene: cd09693:cas5 Type: Type-I Location: 235517-236218 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 236220-237134 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 237136-238968 bp Gene: pfam01881:cas6 Type: other Location: 239013-239750 bp Gene: pfam13280:WYL Type: other Location: 239828-240781 bp Gene: COG2378:WYL Type: other Location: 250352-251251 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 229123-231182 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JABBZI010000016.1 Clostridioides difficile strain HC132 NODE_16_length_91798_cov_31.0196, whole genome shotgun sequence

⇒Summary: seq-len = 91798 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 79746-81152 bp Zoom in on locus 1 x22 CRISPR array Location: 79746-81152 bp Num of repeats: 22 Spacers: s1-s21 CRISPR array Location: 79746-81152 bp Num of repeats: 22 Spacers: s1-s21 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 79746-81152 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: JABBZI010000030.1 Clostridioides difficile strain HC132 NODE_30_length_42543_cov_21.6614, whole genome shotgun sequence

⇒Summary: seq-len = 42543 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 127-3593 bp Zoom in on locus 1 x8 x19 CRISPR array Location: 127-613 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 127-613 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 2389-3593 bp Num of repeats: 19 Spacers: s8-s25 CRISPR array Location: 2389-3593 bp Num of repeats: 19 Spacers: s8-s25 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 127-613 bp]: array | spacers
           [Locus range 2389-3593 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: JABBZI010000055.1 Clostridioides difficile strain HC132 NODE_55_length_6649_cov_35.3458, whole genome shotgun sequence

⇒Summary: seq-len = 6649 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 192-1271 bp Zoom in on locus 1 x17 CRISPR array Location: 192-1271 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 192-1271 bp Num of repeats: 17 Spacers: s1-s16 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 192-1271 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: JABBZI010000313.1 Clostridioides difficile strain HC132 NODE_313_length_224_cov_2.78351, whole genome shotgun sequence

⇒Summary: seq-len = 224 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 33-191 bp Zoom in on locus 1 x3 CRISPR array Location: 33-191 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 33-191 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 33-191 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)