CRISPRone

CRISPRone report for GCA_012987005.1_ASM1298700v1

♦ Seq 1: JAAQZH010000011.1 Pseudomonas aeruginosa strain WS 5022 11_247346_49.0127, whole genome shotgun sequence

⇒Summary: seq-len = 247346 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 207726-217924 bp Zoom in on locus 1 x10 x12 CRISPR array Location: 207726-208294 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 207726-208294 bp Num of repeats: 10 Spacers: s1-s9 Gene: cd09739:cas6f Type: other Location: 208477-209040 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 209044-210072 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 210083-211066 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 211053-212354 bp Gene: COG1203:cas3 Type: Type-I Location: 212769-215999 bp Gene: cd09718:cas1 Type: universal Location: 215996-216970 bp CRISPR array Location: 217236-217924 bp Num of repeats: 12 Spacers: s10-s20 CRISPR array Location: 217236-217924 bp Num of repeats: 12 Spacers: s10-s20 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 207726-208294 bp]: array | spacers
           [Locus range 217236-217924 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JAAQZH010000014.1 Pseudomonas aeruginosa strain WS 5022 14_197935_58.7894, whole genome shotgun sequence

⇒Summary: seq-len = 197935 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 29235-29562 bp Zoom in on locus 1 x6 CRISPR array Location: 29235-29562 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 29235-29562 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 29235-29562 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)