CRISPRone

CRISPRone report for GCA_013114995.1_ASM1311499v1

♦ Seq 1: JABGNV010000036.1 Pseudomonas aeruginosa strain 3731 scaffold_35, whole genome shotgun sequence

⇒Summary: seq-len = 32636 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-232 bp Zoom in on locus 1 x4 CRISPR array Location: 0-232 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 0-232 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 0-232 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JABGNV010000040.1 Pseudomonas aeruginosa strain 3731 scaffold_39, whole genome shotgun sequence

⇒Summary: seq-len = 18095 bp; # of CRISPR array = 1; # of cas gene = 7  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 8946-18100 bp Zoom in on locus 1 x21 Gene: cd09641:cas3HD Type: Type-I Location: 8946-11180 bp Gene: cd09752:cas5 Type: Subtype-I-C Location: 11231-11905 bp Gene: cd09757:cas8c Type: Subtype-I-C Location: 11902-13695 bp Gene: cd09689:cas7 Type: Subtype-I-C Location: 13692-14561 bp Gene: pfam01930:cas4 Type: Type-I Location: 14580-15212 bp Gene: cd09721:cas1 Type: universal Location: 15216-16256 bp Gene: cd09725:cas2 Type: universal Location: 16266-16556 bp CRISPR array Location: 16739-18100 bp Num of repeats: 21 Spacers: s1-s20 CRISPR array Location: 16739-18100 bp Num of repeats: 21 Spacers: s1-s20 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 16739-18100 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: JABGNV010000004.1 Pseudomonas aeruginosa strain 3731 scaffold_3, whole genome shotgun sequence

⇒Summary: seq-len = 655076 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 319836-320464 bp Zoom in on locus 1 x11 CRISPR array Location: 319836-320464 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 319836-320464 bp Num of repeats: 11 Spacers: s1-s10 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 319836-320464 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)