CRISPRone

CRISPRone report for GCA_013115045.1_ASM1311504v1

♦ Seq 1: JABGNN010000039.1 Pseudomonas aeruginosa strain 4139 scaffold_38, whole genome shotgun sequence

⇒Summary: seq-len = 27898 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 27666-27899 bp Zoom in on locus 1 x4 CRISPR array Location: 27666-27899 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 27666-27899 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 27666-27899 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JABGNN010000120.1 Pseudomonas aeruginosa strain 4139 scaffold_119, whole genome shotgun sequence

⇒Summary: seq-len = 232 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-233 bp Zoom in on locus 1 x4 CRISPR array Location: 0-233 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 0-233 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 0-233 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: JABGNN010000023.1 Pseudomonas aeruginosa strain 4139 scaffold_22, whole genome shotgun sequence

⇒Summary: seq-len = 83389 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 82386-83073 bp Zoom in on locus 1 x12 CRISPR array Location: 82386-83073 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 82386-83073 bp Num of repeats: 12 Spacers: s1-s11 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 82386-83073 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: JABGNN010000041.1 Pseudomonas aeruginosa strain 4139 scaffold_40, whole genome shotgun sequence

⇒Summary: seq-len = 17964 bp; # of CRISPR array = 1; # of cas gene = 7  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 8946-17965 bp Zoom in on locus 1 x19 Gene: cd09641:cas3HD Type: Type-I Location: 8946-11180 bp Gene: cd09752:cas5 Type: Subtype-I-C Location: 11231-11905 bp Gene: cd09757:cas8c Type: Subtype-I-C Location: 11902-13695 bp Gene: cd09689:cas7 Type: Subtype-I-C Location: 13692-14561 bp Gene: pfam01930:cas4 Type: Type-I Location: 14580-15212 bp Gene: cd09721:cas1 Type: universal Location: 15216-16256 bp Gene: cd09725:cas2 Type: universal Location: 16266-16556 bp CRISPR array Location: 16738-17965 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 16738-17965 bp Num of repeats: 19 Spacers: s1-s18 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 16738-17965 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)