CRISPRone

CRISPRone report for GCA_013115385.1_ASM1311538v1

♦ Seq 1: JABGNQ010000027.1 Pseudomonas aeruginosa strain 3940 scaffold_26, whole genome shotgun sequence

⇒Summary: seq-len = 51076 bp; # of CRISPR array = 1; # of cas gene = 7  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 8946-18100 bp Zoom in on locus 1 x21 Gene: cd09641:cas3HD Type: Type-I Location: 8946-11180 bp Gene: cd09752:cas5 Type: Subtype-I-C Location: 11231-11905 bp Gene: cd09757:cas8c Type: Subtype-I-C Location: 11902-13695 bp Gene: cd09689:cas7 Type: Subtype-I-C Location: 13692-14561 bp Gene: pfam01930:cas4 Type: Type-I Location: 14580-15212 bp Gene: cd09721:cas1 Type: universal Location: 15216-16256 bp Gene: cd09725:cas2 Type: universal Location: 16266-16556 bp CRISPR array Location: 16738-18100 bp Num of repeats: 21 Spacers: s1-s20 CRISPR array Location: 16738-18100 bp Num of repeats: 21 Spacers: s1-s20 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 16738-18100 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JABGNQ010000007.1 Pseudomonas aeruginosa strain 3940 scaffold_6, whole genome shotgun sequence

⇒Summary: seq-len = 653911 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 334601-335288 bp Zoom in on locus 1 x12 CRISPR array Location: 334601-335288 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 334601-335288 bp Num of repeats: 12 Spacers: s1-s11 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 334601-335288 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)