CRISPRone

CRISPRone report for GCA_013115435.1_ASM1311543v1

♦ Seq 1: JABGNO010000008.1 Pseudomonas aeruginosa strain 3942 scaffold_7, whole genome shotgun sequence

⇒Summary: seq-len = 335309 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 317-945 bp Zoom in on locus 1 x11 CRISPR array Location: 317-945 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 317-945 bp Num of repeats: 11 Spacers: s1-s10 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 317-945 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JABGNO010000029.1 Pseudomonas aeruginosa strain 3942 scaffold_28, whole genome shotgun sequence

⇒Summary: seq-len = 50982 bp; # of CRISPR array = 1; # of cas gene = 7  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 8945-18034 bp Zoom in on locus 1 x20 Gene: cd09641:cas3HD Type: Type-I Location: 8945-11179 bp Gene: cd09752:cas5 Type: Subtype-I-C Location: 11230-11904 bp Gene: cd09757:cas8c Type: Subtype-I-C Location: 11901-13694 bp Gene: cd09689:cas7 Type: Subtype-I-C Location: 13691-14560 bp Gene: pfam01930:cas4 Type: Type-I Location: 14579-15211 bp Gene: cd09721:cas1 Type: universal Location: 15215-16255 bp Gene: cd09725:cas2 Type: universal Location: 16265-16555 bp CRISPR array Location: 16738-18034 bp Num of repeats: 20 Spacers: s1-s19 CRISPR array Location: 16738-18034 bp Num of repeats: 20 Spacers: s1-s19 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 16738-18034 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)