CRISPRone

CRISPRone report for GCA_013115455.1_ASM1311545v1

♦ Seq 1: JABGNT010000008.1 Pseudomonas aeruginosa strain 3734 scaffold_7, whole genome shotgun sequence

⇒Summary: seq-len = 335567 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 317-945 bp Zoom in on locus 1 x11 CRISPR array Location: 317-945 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 317-945 bp Num of repeats: 11 Spacers: s1-s10 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 317-945 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JABGNT010000031.1 Pseudomonas aeruginosa strain 3734 scaffold_30, whole genome shotgun sequence

⇒Summary: seq-len = 50371 bp; # of CRISPR array = 1; # of cas gene = 7  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 8945-18101 bp Zoom in on locus 1 x21 Gene: cd09641:cas3HD Type: Type-I Location: 8945-11179 bp Gene: cd09752:cas5 Type: Subtype-I-C Location: 11230-11904 bp Gene: cd09757:cas8c Type: Subtype-I-C Location: 11901-13694 bp Gene: cd09689:cas7 Type: Subtype-I-C Location: 13691-14560 bp Gene: pfam01930:cas4 Type: Type-I Location: 14579-15211 bp Gene: cd09721:cas1 Type: universal Location: 15215-16255 bp Gene: cd09725:cas2 Type: universal Location: 16265-16555 bp CRISPR array Location: 16739-18101 bp Num of repeats: 21 Spacers: s1-s20 CRISPR array Location: 16739-18101 bp Num of repeats: 21 Spacers: s1-s20 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 16739-18101 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)