CRISPRone

CRISPRone report for GCA_013115465.1_ASM1311546v1

♦ Seq 1: JABGNR010000038.1 Pseudomonas aeruginosa strain 3736 scaffold_37, whole genome shotgun sequence

⇒Summary: seq-len = 37195 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 36556-37065 bp Zoom in on locus 1 x9 CRISPR array Location: 36556-37065 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 36556-37065 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 36556-37065 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JABGNR010000050.1 Pseudomonas aeruginosa strain 3736 scaffold_49, whole genome shotgun sequence

⇒Summary: seq-len = 10254 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 105-10146 bp Zoom in on locus 1 x16 x4 CRISPR array Location: 105-1033 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 105-1033 bp Num of repeats: 16 Spacers: s1-s15 Gene: cd09718:cas1 Type: universal Location: 1293-2267 bp Gene: COG1203:cas3 Type: Type-I Location: 2264-5494 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 5878-7179 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 7166-8149 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 8160-9188 bp Gene: cd09739:cas6f Type: other Location: 9192-9755 bp CRISPR array Location: 9939-10146 bp Num of repeats: 4 Spacers: s16-s18 CRISPR array Location: 9939-10146 bp Num of repeats: 4 Spacers: s16-s18 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 105-1033 bp]: array | spacers
           [Locus range 9939-10146 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: JABGNR010000026.1 Pseudomonas aeruginosa strain 3736 scaffold_25, whole genome shotgun sequence

⇒Summary: seq-len = 64042 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 63011-63938 bp Zoom in on locus 1 x16 CRISPR array Location: 63011-63938 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 63011-63938 bp Num of repeats: 16 Spacers: s1-s15 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 63011-63938 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)