CRISPRone

CRISPRone report for GCA_013115475.1_ASM1311547v1

♦ Seq 1: JABGNP010000037.1 Pseudomonas aeruginosa strain 3941 scaffold_36, whole genome shotgun sequence

⇒Summary: seq-len = 50546 bp; # of CRISPR array = 1; # of cas gene = 7  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 8945-18145 bp Zoom in on locus 1 x22 Gene: cd09641:cas3HD Type: Type-I Location: 8945-11179 bp Gene: cd09752:cas5 Type: Subtype-I-C Location: 11230-11904 bp Gene: cd09757:cas8c Type: Subtype-I-C Location: 11901-13694 bp Gene: cd09689:cas7 Type: Subtype-I-C Location: 13691-14560 bp Gene: pfam01930:cas4 Type: Type-I Location: 14579-15211 bp Gene: cd09721:cas1 Type: universal Location: 15215-16255 bp Gene: cd09725:cas2 Type: universal Location: 16265-16555 bp CRISPR array Location: 16739-18145 bp Num of repeats: 22 Spacers: s1-s21 CRISPR array Location: 16739-18145 bp Num of repeats: 22 Spacers: s1-s21 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 16739-18145 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JABGNP010000007.1 Pseudomonas aeruginosa strain 3941 scaffold_6, whole genome shotgun sequence

⇒Summary: seq-len = 335498 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 317-885 bp Zoom in on locus 1 x10 CRISPR array Location: 317-885 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 317-885 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 317-885 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)