CRISPRone

CRISPRone report for GCA_013115495.1_ASM1311549v1

♦ Seq 1: JABGNS010000008.1 Pseudomonas aeruginosa strain 3735 scaffold_7, whole genome shotgun sequence

⇒Summary: seq-len = 335907 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 665-1293 bp Zoom in on locus 1 x11 CRISPR array Location: 665-1293 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 665-1293 bp Num of repeats: 11 Spacers: s1-s10 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 665-1293 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JABGNS010000026.1 Pseudomonas aeruginosa strain 3735 scaffold_25, whole genome shotgun sequence

⇒Summary: seq-len = 51107 bp; # of CRISPR array = 1; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 8946-18103 bp Zoom in on locus 1 x21 Gene: cd09641:cas3HD Type: Type-I Location: 8946-11180 bp Gene: cd09752:cas5 Type: Subtype-I-C Location: 11231-11905 bp Gene: cd09757:cas8c Type: Subtype-I-C Location: 11902-12897 bp Gene: pfam09709:cas8c Type: Subtype-I-C Location: 12846-13694 bp Gene: cd09689:cas7 Type: Subtype-I-C Location: 13691-14560 bp Gene: pfam01930:cas4 Type: Type-I Location: 14579-15211 bp Gene: cd09721:cas1 Type: universal Location: 15215-16255 bp Gene: cd09725:cas2 Type: universal Location: 16265-16555 bp CRISPR array Location: 16741-18103 bp Num of repeats: 21 Spacers: s1-s20 CRISPR array Location: 16741-18103 bp Num of repeats: 21 Spacers: s1-s20 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 16741-18103 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)