CRISPRone

CRISPRone report for GCA_013169175.1_ASM1316917v1

♦ Seq 1: SWGG01000115.1 Pseudomonas aeruginosa strain C2-155-2 contig_99_1, whole genome shotgun sequence

⇒Summary: seq-len = 28746 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 10809-21478 bp Zoom in on locus 1 x15 x21 CRISPR array Location: 10809-11677 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 10809-11677 bp Num of repeats: 15 Spacers: s1-s14 Gene: cd09739:cas6f Type: other Location: 11860-12423 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 12427-13455 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 13466-14449 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 14436-15740 bp Gene: COG1203:cas3 Type: Type-I Location: 15798-19028 bp Gene: cd09718:cas1 Type: universal Location: 19025-19999 bp CRISPR array Location: 20251-21478 bp Num of repeats: 21 Spacers: s15-s34 CRISPR array Location: 20251-21478 bp Num of repeats: 21 Spacers: s15-s34 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 10809-11677 bp]: array | spacers
           [Locus range 20251-21478 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: SWGG01000024.1 Pseudomonas aeruginosa strain C2-155-2 contig_22_1, whole genome shotgun sequence

⇒Summary: seq-len = 347922 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5387-5774 bp Zoom in on locus 1 x7 CRISPR array Location: 5387-5774 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 5387-5774 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 5387-5774 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)