CRISPRone

CRISPRone report for GCA_013169265.1_ASM1316926v1

♦ Seq 1: SWGM01000005.1 Pseudomonas aeruginosa strain C2-100-1 contig_4_1, whole genome shotgun sequence

⇒Summary: seq-len = 186611 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 62347-63035 bp Zoom in on locus 1 x12 CRISPR array Location: 62347-63035 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 62347-63035 bp Num of repeats: 12 Spacers: s1-s11 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 62347-63035 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: SWGM01000081.1 Pseudomonas aeruginosa strain C2-100-1 contig_64_1, whole genome shotgun sequence

⇒Summary: seq-len = 110572 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 27006-36113 bp Zoom in on locus 1 x2 x8 CRISPR array Location: 27006-27093 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 27006-27093 bp Num of repeats: 2 Spacers: s1-s1 Gene: cd09739:cas6f Type: other Location: 27275-27838 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 27842-28870 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 28881-29864 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 29851-31155 bp Gene: COG1203:cas3 Type: Type-I Location: 31213-34443 bp Gene: cd09718:cas1 Type: universal Location: 34440-35414 bp CRISPR array Location: 35666-36113 bp Num of repeats: 8 Spacers: s2-s8 CRISPR array Location: 35666-36113 bp Num of repeats: 8 Spacers: s2-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 27006-27093 bp]: array | spacers
           [Locus range 35666-36113 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)