CRISPRone

CRISPRone report for GCA_013176935.1_ASM1317693v1

♦ Seq 1: JABLSP010000041.1 Pseudomonas aeruginosa strain S5 NODE_41_length_48615_cov_141.119, whole genome shotgun sequence

⇒Summary: seq-len = 48615 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 36373-47702 bp Zoom in on locus 1 x29 x12 CRISPR array Location: 36373-38081 bp Num of repeats: 29 Spacers: s1-s28 CRISPR array Location: 36373-38081 bp Num of repeats: 29 Spacers: s1-s28 Gene: cd09739:cas6f Type: other Location: 38264-38827 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 38831-39859 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 39870-40853 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 40840-42141 bp Gene: COG1203:cas3 Type: Type-I Location: 42552-45782 bp Gene: cd09718:cas1 Type: universal Location: 45779-46753 bp CRISPR array Location: 47015-47702 bp Num of repeats: 12 Spacers: s29-s39 CRISPR array Location: 47015-47702 bp Num of repeats: 12 Spacers: s29-s39 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 36373-38081 bp]: array | spacers
           [Locus range 47015-47702 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JABLSP010000029.1 Pseudomonas aeruginosa strain S5 NODE_29_length_89734_cov_203.57, whole genome shotgun sequence

⇒Summary: seq-len = 89734 bp; # of CRISPR array = 1; # of cas gene = 7  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 38694-47913 bp Zoom in on locus 1 x22 Gene: cd09641:cas3HD Type: Type-I Location: 38694-40928 bp Gene: cd09752:cas5 Type: Subtype-I-C Location: 40978-41652 bp Gene: cd09757:cas8c Type: Subtype-I-C Location: 41649-43442 bp Gene: cd09689:cas7 Type: Subtype-I-C Location: 43439-44308 bp Gene: pfam01930:cas4 Type: Type-I Location: 44327-44959 bp Gene: cd09721:cas1 Type: universal Location: 44963-46003 bp Gene: cd09725:cas2 Type: universal Location: 46013-46303 bp CRISPR array Location: 46485-47913 bp Num of repeats: 22 Spacers: s1-s21 CRISPR array Location: 46485-47913 bp Num of repeats: 22 Spacers: s1-s21 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 46485-47913 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)