CRISPRone

CRISPRone report for GCA_013176945.1_ASM1317694v1

♦ Seq 1: JABLSR010000001.1 Pseudomonas aeruginosa strain S3 NODE_1_length_572469_cov_176.725, whole genome shotgun sequence

⇒Summary: seq-len = 572469 bp; # of CRISPR array = 2; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1-10879 bp Zoom in on locus 1 x10 x18 CRISPR array Location: 1-578 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 1-578 bp Num of repeats: 10 Spacers: s1-s9 Gene: pfam09707:cas2 Type: universal Location: 643-942 bp Gene: cd09719:cas1 Type: universal Location: 939-1829 bp Gene: pfam08798:cas6e Type: other Location: 1856-2395 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 2442-3104 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 3106-4248 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 4258-4788 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 4785-6353 bp Gene: cd09641:cas3HD Type: Type-I Location: 6356-9037 bp CRISPR array Location: 9814-10879 bp Num of repeats: 18 Spacers: s10-s26 CRISPR array Location: 9814-10879 bp Num of repeats: 18 Spacers: s10-s26 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1-578 bp]: array | spacers
           [Locus range 9814-10879 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JABLSR010000005.1 Pseudomonas aeruginosa strain S3 NODE_5_length_292621_cov_170.977, whole genome shotgun sequence

⇒Summary: seq-len = 292621 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 27-178 bp Zoom in on locus 1 x3 CRISPR array Location: 27-178 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 27-178 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 27-178 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)