CRISPRone

CRISPRone report for GCA_013176995.1_ASM1317699v1

♦ Seq 1: JABLST010000014.1 Pseudomonas aeruginosa strain S17 NODE_14_length_164858_cov_236.304, whole genome shotgun sequence

⇒Summary: seq-len = 164858 bp; # of CRISPR array = 1; # of cas gene = 6  (type I, IV) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 144572-150901 bp Zoom in on locus 1 x10 CRISPR array Location: 144572-145138 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 144572-145138 bp Num of repeats: 10 Spacers: s1-s9 Gene: cd09673:cas3f Type: Subtype-I-F Location: 145162-145497 bp Gene: COG1518:cas1 Type: universal Location: 145478-146347 bp Gene: mkCas0093:csf3gr5 Type: Subtype-IV-A Location: 146352-147032 bp Gene: COG1199:DinG Type: Subtype-IV-A Location: 147032-149245 bp Gene: pfam09618:cas6f Type: Subtype-I-F Location: 149259-149813 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 149801-150901 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 144572-145138 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JABLST010000040.1 Pseudomonas aeruginosa strain S17 NODE_40_length_44169_cov_149.299, whole genome shotgun sequence

⇒Summary: seq-len = 44169 bp; # of CRISPR array = 0; # of cas gene = 3  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1256-11841 bp Zoom in on locus 1 Gene: COG0640:csa3 Type: Subtype-I-A Location: 1256-2125 bp Gene: pfam00078:RT Type: other Location: 7034-8302 bp Gene: unk Type: unknown Location: 8452-8850 bp Gene: unk Type: unknown Location: 9034-9213 bp Gene: cls000170:cas4 Type: Type-I Location: 10297-11841 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: JABLST010000038.1 Pseudomonas aeruginosa strain S17 NODE_38_length_49097_cov_121.076, whole genome shotgun sequence

⇒Summary: seq-len = 49097 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 36340-48099 bp Zoom in on locus 1 x21 x33 CRISPR array Location: 36340-37568 bp Num of repeats: 21 Spacers: s1-s20 CRISPR array Location: 36340-37568 bp Num of repeats: 21 Spacers: s1-s20 Gene: cd09739:cas6f Type: other Location: 37751-38314 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 38318-39346 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 39357-40340 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 40327-41631 bp Gene: COG1203:cas3 Type: Type-I Location: 41689-44919 bp Gene: cd09718:cas1 Type: universal Location: 44916-45890 bp CRISPR array Location: 46152-48099 bp Num of repeats: 33 Spacers: s21-s52 CRISPR array Location: 46152-48099 bp Num of repeats: 33 Spacers: s21-s52 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 36340-37568 bp]: array | spacers
           [Locus range 46152-48099 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)