CRISPRone

CRISPRone report for GCA_013177155.1_ASM1317715v1

♦ Seq 1: JABLSM010000017.1 Pseudomonas aeruginosa strain S9 NODE_17_length_128481_cov_138.285, whole genome shotgun sequence

⇒Summary: seq-len = 128481 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 273-901 bp Zoom in on locus 1 x11 CRISPR array Location: 273-901 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 273-901 bp Num of repeats: 11 Spacers: s1-s10 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 273-901 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JABLSM010000032.1 Pseudomonas aeruginosa strain S9 NODE_32_length_47569_cov_135.584, whole genome shotgun sequence

⇒Summary: seq-len = 47569 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 37280-47298 bp Zoom in on locus 1 x20 x5 CRISPR array Location: 37280-38448 bp Num of repeats: 20 Spacers: s1-s19 CRISPR array Location: 37280-38448 bp Num of repeats: 20 Spacers: s1-s19 Gene: pfam09618:cas6f Type: Subtype-I-F Location: 38631-39194 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 39198-40226 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 40237-41220 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 41207-42511 bp Gene: COG1203:cas3 Type: Type-I Location: 42569-45799 bp Gene: cd09718:cas1 Type: universal Location: 45796-46770 bp CRISPR array Location: 47031-47298 bp Num of repeats: 5 Spacers: s20-s23 CRISPR array Location: 47031-47298 bp Num of repeats: 5 Spacers: s20-s23 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 37280-38448 bp]: array | spacers
           [Locus range 47031-47298 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: JABLSM010000004.1 Pseudomonas aeruginosa strain S9 NODE_4_length_372454_cov_156.891, whole genome shotgun sequence

⇒Summary: seq-len = 372454 bp; # of CRISPR array = 1; # of cas gene = 7  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 336458-345541 bp Zoom in on locus 1 x20 Gene: cd09641:cas3HD Type: Type-I Location: 336458-338692 bp Gene: cd09752:cas5 Type: Subtype-I-C Location: 338742-339416 bp Gene: cd09757:cas8c Type: Subtype-I-C Location: 339413-341206 bp Gene: cd09689:cas7 Type: Subtype-I-C Location: 341203-342072 bp Gene: pfam01930:cas4 Type: Type-I Location: 342091-342723 bp Gene: cd09721:cas1 Type: universal Location: 342727-343767 bp Gene: cd09725:cas2 Type: universal Location: 343777-344067 bp CRISPR array Location: 344247-345541 bp Num of repeats: 20 Spacers: s1-s19 CRISPR array Location: 344247-345541 bp Num of repeats: 20 Spacers: s1-s19 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 344247-345541 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)