CRISPRone

CRISPRone report for GCA_013178535.1_ASM1317853v1

♦ Seq 1: JABLUA010000019.1 Pseudomonas aeruginosa strain PASP496 NODE_19_length_111856_cov_49.8687, whole genome shotgun sequence

⇒Summary: seq-len = 111856 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 111061-111689 bp Zoom in on locus 1 x11 CRISPR array Location: 111061-111689 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 111061-111689 bp Num of repeats: 11 Spacers: s1-s10 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 111061-111689 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JABLUA010000031.1 Pseudomonas aeruginosa strain PASP496 NODE_31_length_50460_cov_47.738, whole genome shotgun sequence

⇒Summary: seq-len = 50460 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 168-12275 bp Zoom in on locus 1 x27 x27 CRISPR array Location: 168-1757 bp Num of repeats: 27 Spacers: s1-s26 CRISPR array Location: 168-1757 bp Num of repeats: 27 Spacers: s1-s26 Gene: cd09718:cas1 Type: universal Location: 2017-2991 bp Gene: COG1203:cas3 Type: Type-I Location: 2988-6218 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 6629-7930 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 7917-8900 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 8911-9939 bp Gene: cd09739:cas6f Type: other Location: 9943-10506 bp CRISPR array Location: 10691-12275 bp Num of repeats: 27 Spacers: s27-s52 CRISPR array Location: 10691-12275 bp Num of repeats: 27 Spacers: s27-s52 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 168-1757 bp]: array | spacers
           [Locus range 10691-12275 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)