CRISPRone

CRISPRone report for GCA_013178605.1_ASM1317860v1

♦ Seq 1: JABLUB010000039.1 Pseudomonas aeruginosa strain PASP475 NODE_39_length_48284_cov_62.8204, whole genome shotgun sequence

⇒Summary: seq-len = 48284 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 125-10092 bp Zoom in on locus 1 x8 x9 CRISPR array Location: 125-573 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 125-573 bp Num of repeats: 8 Spacers: s1-s7 Gene: cd09718:cas1 Type: universal Location: 838-1812 bp Gene: COG1203:cas3 Type: Type-I Location: 1809-5039 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 5454-6764 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 6751-7797 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 7808-8836 bp Gene: cd09739:cas6f Type: other Location: 8840-9403 bp CRISPR array Location: 9586-10092 bp Num of repeats: 9 Spacers: s8-s15 CRISPR array Location: 9586-10092 bp Num of repeats: 9 Spacers: s8-s15 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 125-573 bp]: array | spacers
           [Locus range 9586-10092 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JABLUB010000018.1 Pseudomonas aeruginosa strain PASP475 NODE_18_length_134764_cov_68.1885, whole genome shotgun sequence

⇒Summary: seq-len = 134764 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 128909-130378 bp Zoom in on locus 1 x25 CRISPR array Location: 128909-130378 bp Num of repeats: 25 Spacers: s1-s24 CRISPR array Location: 128909-130378 bp Num of repeats: 25 Spacers: s1-s24 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 128909-130378 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: JABLUB010000061.1 Pseudomonas aeruginosa strain PASP475 NODE_61_length_12489_cov_60.3377, whole genome shotgun sequence

⇒Summary: seq-len = 12489 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 125-694 bp Zoom in on locus 1 x10 CRISPR array Location: 125-694 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 125-694 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 125-694 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: JABLUB010000017.1 Pseudomonas aeruginosa strain PASP475 NODE_17_length_137942_cov_70.4726, whole genome shotgun sequence

⇒Summary: seq-len = 137942 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 26015-26582 bp Zoom in on locus 1 x10 CRISPR array Location: 26015-26582 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 26015-26582 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 26015-26582 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)