CRISPRone

CRISPRone report for GCA_013178665.1_ASM1317866v1

♦ Seq 1: JABLUF010000028.1 Pseudomonas aeruginosa strain PASP415 NODE_28_length_48444_cov_35.7483, whole genome shotgun sequence

⇒Summary: seq-len = 48444 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 37617-48107 bp Zoom in on locus 1 x12 x15 CRISPR array Location: 37617-38306 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 37617-38306 bp Num of repeats: 12 Spacers: s1-s11 Gene: cd09739:cas6f Type: other Location: 38489-39052 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 39056-40084 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 40095-41078 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 41065-42366 bp Gene: COG1203:cas3 Type: Type-I Location: 42777-46007 bp Gene: cd09718:cas1 Type: universal Location: 46004-46978 bp CRISPR array Location: 47239-48107 bp Num of repeats: 15 Spacers: s12-s25 CRISPR array Location: 47239-48107 bp Num of repeats: 15 Spacers: s12-s25 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 37617-38306 bp]: array | spacers
           [Locus range 47239-48107 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JABLUF010000021.1 Pseudomonas aeruginosa strain PASP415 NODE_21_length_93573_cov_38.5067, whole genome shotgun sequence

⇒Summary: seq-len = 93573 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 338-2708 bp Zoom in on locus 1 x40 CRISPR array Location: 338-2708 bp Num of repeats: 40 Spacers: s1-s39 CRISPR array Location: 338-2708 bp Num of repeats: 40 Spacers: s1-s39 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 338-2708 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)