CRISPRone

CRISPRone report for GCA_013178705.1_ASM1317870v1

♦ Seq 1: JABLUG010000068.1 Pseudomonas aeruginosa strain PASP398 NODE_68_length_1673_cov_17.2713, whole genome shotgun sequence

⇒Summary: seq-len = 1673 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 604-1591 bp Zoom in on locus 1 x17 CRISPR array Location: 604-1591 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 604-1591 bp Num of repeats: 17 Spacers: s1-s16 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 604-1591 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JABLUG010000038.1 Pseudomonas aeruginosa strain PASP398 NODE_38_length_47427_cov_17.3141, whole genome shotgun sequence

⇒Summary: seq-len = 47427 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 37566-47345 bp Zoom in on locus 1 x12 x9 CRISPR array Location: 37566-38250 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 37566-38250 bp Num of repeats: 12 Spacers: s1-s11 Gene: cd09739:cas6f Type: other Location: 38434-38997 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 39001-40029 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 40040-41023 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 41010-42314 bp Gene: COG1203:cas3 Type: Type-I Location: 42372-45602 bp Gene: cd09718:cas1 Type: universal Location: 45599-46573 bp CRISPR array Location: 46838-47345 bp Num of repeats: 9 Spacers: s12-s19 CRISPR array Location: 46838-47345 bp Num of repeats: 9 Spacers: s12-s19 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 37566-38250 bp]: array | spacers
           [Locus range 46838-47345 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)