CRISPRone

CRISPRone report for GCA_013178835.1_ASM1317883v1

♦ Seq 1: JABLUP010000012.1 Pseudomonas aeruginosa strain PASP198 NODE_12_length_209173_cov_65.4365, whole genome shotgun sequence

⇒Summary: seq-len = 209173 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 83-951 bp Zoom in on locus 1 x15 CRISPR array Location: 83-951 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 83-951 bp Num of repeats: 15 Spacers: s1-s14 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 83-951 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JABLUP010000001.1 Pseudomonas aeruginosa strain PASP198 NODE_1_length_785168_cov_65.3398, whole genome shotgun sequence

⇒Summary: seq-len = 785168 bp; # of CRISPR array = 3; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 574998-585878 bp Zoom in on locus 1 x6 x2 x19 CRISPR array Location: 574998-575333 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 574998-575333 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 575427-575517 bp Num of repeats: 2 Spacers: s6-s6 CRISPR array Location: 575427-575517 bp Num of repeats: 2 Spacers: s6-s6 Gene: cd09641:cas3HD Type: Type-I Location: 576291-578972 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 578975-580543 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 580540-581070 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 581080-582222 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 582224-582886 bp Gene: pfam08798:cas6e Type: other Location: 582933-583472 bp Gene: cd09719:cas1 Type: universal Location: 583499-584389 bp Gene: pfam09707:cas2 Type: universal Location: 584386-584685 bp CRISPR array Location: 584750-585878 bp Num of repeats: 19 Spacers: s7-s24 CRISPR array Location: 584750-585878 bp Num of repeats: 19 Spacers: s7-s24 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 574998-575333 bp]: array | spacers
           [Locus range 575427-575517 bp]: array | spacers
           [Locus range 584750-585878 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: JABLUP010000032.1 Pseudomonas aeruginosa strain PASP198 NODE_32_length_47366_cov_63.0845, whole genome shotgun sequence

⇒Summary: seq-len = 47366 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 37505-47284 bp Zoom in on locus 1 x7 x14 CRISPR array Location: 37505-37894 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 37505-37894 bp Num of repeats: 7 Spacers: s1-s6 Gene: cd09739:cas6f Type: other Location: 38077-38640 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 38644-39672 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 39683-40666 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 40653-41957 bp Gene: COG1203:cas3 Type: Type-I Location: 42015-45245 bp Gene: cd09718:cas1 Type: universal Location: 45242-46216 bp CRISPR array Location: 46477-47284 bp Num of repeats: 14 Spacers: s7-s19 CRISPR array Location: 46477-47284 bp Num of repeats: 14 Spacers: s7-s19 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 37505-37894 bp]: array | spacers
           [Locus range 46477-47284 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)