CRISPRone

CRISPRone report for GCA_013178895.1_ASM1317889v1

♦ Seq 1: JABLTV010000004.1 Pseudomonas aeruginosa strain PASP639 NODE_4_length_425869_cov_34.6687, whole genome shotgun sequence

⇒Summary: seq-len = 425869 bp; # of CRISPR array = 2; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 298473-308985 bp Zoom in on locus 1 x9 x13 CRISPR array Location: 298473-298991 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 298473-298991 bp Num of repeats: 9 Spacers: s1-s8 Gene: cd09641:cas3HD Type: Type-I Location: 299764-302445 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 302448-304016 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 304013-304543 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 304553-305695 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 305697-306359 bp Gene: pfam08798:cas6e Type: other Location: 306334-306945 bp Gene: cd09719:cas1 Type: universal Location: 306972-307862 bp Gene: pfam09707:cas2 Type: universal Location: 307859-308158 bp CRISPR array Location: 308223-308985 bp Num of repeats: 13 Spacers: s9-s20 CRISPR array Location: 308223-308985 bp Num of repeats: 13 Spacers: s9-s20 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 298473-298991 bp]: array | spacers
           [Locus range 308223-308985 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JABLTV010000018.1 Pseudomonas aeruginosa strain PASP639 NODE_18_length_120264_cov_47.53, whole genome shotgun sequence

⇒Summary: seq-len = 120264 bp; # of CRISPR array = 0; # of cas gene = 3  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 77349-87934 bp Zoom in on locus 1 Gene: COG0640:csa3 Type: Subtype-I-A Location: 77349-78218 bp Gene: pfam00078:RT Type: other Location: 83127-84395 bp Gene: unk Type: unknown Location: 84545-84943 bp Gene: unk Type: unknown Location: 85127-85306 bp Gene: cls000170:cas4 Type: Type-I Location: 86390-87934 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)