CRISPRone

CRISPRone report for GCA_013201115.1_ASM1320111v1

♦ Seq 1: CP053706.1 Pseudomonas aeruginosa strain PAC1 chromosome, complete genome

⇒Summary: seq-len = 7564383 bp; # of CRISPR array = 2; # of cas gene = 13  (type I, IV) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1663836-1675655 bp 2 Locus 2: 5186830-5195091 bp 3 Locus 3: 6135497-6146082 bp Zoom in on locus 1 x40 x15 Zoom in on locus 2 Zoom in on locus 3 CRISPR array Location: 1663836-1666204 bp Num of repeats: 40 Spacers: s1-s39 CRISPR array Location: 1663836-1666204 bp Num of repeats: 40 Spacers: s1-s39 Gene: cd09718:cas1 Type: universal Location: 1666465-1667439 bp Gene: COG1203:cas3 Type: Type-I Location: 1667436-1670666 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 1670724-1672028 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 1672015-1672998 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 1673009-1674037 bp Gene: cd09739:cas6f Type: other Location: 1674041-1674604 bp CRISPR array Location: 1674788-1675655 bp Num of repeats: 15 Spacers: s40-s53 CRISPR array Location: 1674788-1675655 bp Num of repeats: 15 Spacers: s40-s53 Gene: COG1199:DinG Type: Subtype-IV-A Location: 5186830-5189196 bp Gene: unk Type: unknown Location: 5189589-5190167 bp Gene: unk Type: unknown Location: 5190311-5190466 bp Gene: COG2378:WYL Type: other Location: 5190720-5191562 bp Gene: pfam13280:WYL Type: other Location: 5192304-5193320 bp Gene: mkCas0115:csx3 Type: other Location: 5193481-5195091 bp Gene: cls000170:cas4 Type: Type-I Location: 6135497-6137041 bp Gene: unk Type: unknown Location: 6138125-6138304 bp Gene: pfam00078:RT Type: other Location: 6139036-6140304 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 6145213-6146082 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1663836-1666204 bp]: array | spacers
           [Locus range 1674788-1675655 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)