CRISPRone

CRISPRone report for GCA_013240315.1_ASM1324031v1

♦ Seq 1: JAATIG010000001.1 Pseudomonas aeruginosa strain DVT466, whole genome shotgun sequence

⇒Summary: seq-len = 5072668 bp; # of CRISPR array = 3; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1874736-1875484 bp 2 Locus 2: 3171042-3181177 bp Zoom in on locus 1 x13 Zoom in on locus 2 x15 x12 CRISPR array Location: 1874736-1875484 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 1874736-1875484 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 3171042-3171910 bp Num of repeats: 15 Spacers: s13-s26 CRISPR array Location: 3171042-3171910 bp Num of repeats: 15 Spacers: s13-s26 Gene: cd09739:cas6f Type: other Location: 3172093-3172656 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 3172660-3173688 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 3173699-3174682 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 3174669-3175973 bp Gene: COG1203:cas3 Type: Type-I Location: 3176031-3179261 bp Gene: cd09718:cas1 Type: universal Location: 3179258-3180232 bp CRISPR array Location: 3180490-3181177 bp Num of repeats: 12 Spacers: s27-s37 CRISPR array Location: 3180490-3181177 bp Num of repeats: 12 Spacers: s27-s37 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1874736-1875484 bp]: array | spacers
           [Locus range 3171042-3171910 bp]: array | spacers
           [Locus range 3180490-3181177 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)