CRISPRone

CRISPRone report for GCA_013240435.1_ASM1324043v1

♦ Seq 1: JAATIK010000001.1 Pseudomonas aeruginosa strain DVT418, whole genome shotgun sequence

⇒Summary: seq-len = 6716239 bp; # of CRISPR array = 3; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 4176645-4187244 bp 2 Locus 2: 5654008-5654756 bp Zoom in on locus 1 x10 x19 Zoom in on locus 2 x13 CRISPR array Location: 4176645-4177213 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 4176645-4177213 bp Num of repeats: 10 Spacers: s1-s9 Gene: cd09718:cas1 Type: universal Location: 4177464-4178438 bp Gene: COG1203:cas3 Type: Type-I Location: 4178435-4181665 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 4182076-4183377 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 4183364-4184347 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 4184358-4185386 bp Gene: cd09739:cas6f Type: other Location: 4185390-4185953 bp CRISPR array Location: 4186137-4187244 bp Num of repeats: 19 Spacers: s10-s27 CRISPR array Location: 4186137-4187244 bp Num of repeats: 19 Spacers: s10-s27 CRISPR array Location: 5654008-5654756 bp Num of repeats: 13 Spacers: s28-s39 CRISPR array Location: 5654008-5654756 bp Num of repeats: 13 Spacers: s28-s39 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 4176645-4177213 bp]: array | spacers
           [Locus range 4186137-4187244 bp]: array | spacers
           [Locus range 5654008-5654756 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)