CRISPRone

CRISPRone report for GCA_013260445.1_ASM1326044v1

♦ Seq 1: CP053922.1 Pseudomonas aeruginosa strain YD001 chromosome, complete genome

⇒Summary: seq-len = 6496756 bp; # of CRISPR array = 3; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1550525-1551693 bp 2 Locus 2: 4358234-4368500 bp Zoom in on locus 1 x20 Zoom in on locus 2 x13 x5 CRISPR array Location: 1550525-1551693 bp Num of repeats: 20 Spacers: s1-s19 CRISPR array Location: 1550525-1551693 bp Num of repeats: 20 Spacers: s1-s19 CRISPR array Location: 4358234-4358994 bp Num of repeats: 13 Spacers: s20-s31 CRISPR array Location: 4358234-4358994 bp Num of repeats: 13 Spacers: s20-s31 Gene: pfam09707:cas2 Type: universal Location: 4359059-4359358 bp Gene: cd09719:cas1 Type: universal Location: 4359355-4360245 bp Gene: pfam08798:cas6e Type: other Location: 4360272-4360811 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 4360858-4361520 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 4361522-4362664 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 4362674-4363204 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 4363201-4364769 bp Gene: cd09641:cas3HD Type: Type-I Location: 4364772-4367453 bp CRISPR array Location: 4368228-4368500 bp Num of repeats: 5 Spacers: s32-s35 CRISPR array Location: 4368228-4368500 bp Num of repeats: 5 Spacers: s32-s35 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1550525-1551693 bp]: array | spacers
           [Locus range 4358234-4358994 bp]: array | spacers
           [Locus range 4368228-4368500 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)