CRISPRone

CRISPRone report for GCA_013284845.1_ASM1328484v1

♦ Seq 1: JABTCD010000050.1 Pseudomonas aeruginosa strain V2O4Ci V2O4Ci_ctg_50, whole genome shotgun sequence

⇒Summary: seq-len = 1828 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 109-1697 bp Zoom in on locus 1 x27 CRISPR array Location: 109-1697 bp Num of repeats: 27 Spacers: s1-s26 CRISPR array Location: 109-1697 bp Num of repeats: 27 Spacers: s1-s26 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 109-1697 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JABTCD010000033.1 Pseudomonas aeruginosa strain V2O4Ci V2O4Ci_ctg_33, whole genome shotgun sequence

⇒Summary: seq-len = 48001 bp; # of CRISPR array = 1; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 154-9822 bp Zoom in on locus 1 x23 Gene: cd09718:cas1 Type: universal Location: 154-1128 bp Gene: COG1203:cas3 Type: Type-I Location: 1125-4355 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 4413-5717 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 5704-6687 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 6698-7726 bp Gene: cd09739:cas6f Type: other Location: 7730-8293 bp CRISPR array Location: 8478-9822 bp Num of repeats: 23 Spacers: s1-s22 CRISPR array Location: 8478-9822 bp Num of repeats: 23 Spacers: s1-s22 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 8478-9822 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: JABTCD010000013.1 Pseudomonas aeruginosa strain V2O4Ci V2O4Ci_ctg_13, whole genome shotgun sequence

⇒Summary: seq-len = 210863 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 147583-148571 bp Zoom in on locus 1 x17 CRISPR array Location: 147583-148571 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 147583-148571 bp Num of repeats: 17 Spacers: s1-s16 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 147583-148571 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: JABTCD010000019.1 Pseudomonas aeruginosa strain V2O4Ci V2O4Ci_ctg_19, whole genome shotgun sequence

⇒Summary: seq-len = 139441 bp; # of CRISPR array = 0; # of cas gene = 4  (type IV) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 32985-41246 bp Zoom in on locus 1 Gene: COG1199:DinG Type: Subtype-IV-A Location: 32985-35351 bp Gene: unk Type: unknown Location: 35744-36391 bp Gene: unk Type: unknown Location: 36457-36744 bp Gene: COG2378:WYL Type: other Location: 36875-37717 bp Gene: pfam13280:WYL Type: other Location: 38459-39475 bp Gene: mkCas0115:csx3 Type: other Location: 39621-41246 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)