CRISPRone

CRISPRone report for GCA_013284855.1_ASM1328485v1

♦ Seq 1: JABTCC010000009.1 Pseudomonas aeruginosa strain 185385 18-5385_ctg_9, whole genome shotgun sequence

⇒Summary: seq-len = 290823 bp; # of CRISPR array = 0; # of cas gene = 4  (type IV) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 98196-106457 bp Zoom in on locus 1 Gene: mkCas0115:csx3 Type: other Location: 98196-99806 bp Gene: pfam13280:WYL Type: other Location: 99967-100983 bp Gene: COG2378:WYL Type: other Location: 101725-102567 bp Gene: unk Type: unknown Location: 102698-102985 bp Gene: unk Type: unknown Location: 103120-103698 bp Gene: COG1199:DinG Type: Subtype-IV-A Location: 104091-106457 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JABTCC010000015.1 Pseudomonas aeruginosa strain 185385 18-5385_ctg_15, whole genome shotgun sequence

⇒Summary: seq-len = 184236 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 105-1693 bp Zoom in on locus 1 x27 CRISPR array Location: 105-1693 bp Num of repeats: 27 Spacers: s1-s26 CRISPR array Location: 105-1693 bp Num of repeats: 27 Spacers: s1-s26 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 105-1693 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: JABTCC010000014.1 Pseudomonas aeruginosa strain 185385 18-5385_ctg_14, whole genome shotgun sequence

⇒Summary: seq-len = 210576 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 62067-62994 bp Zoom in on locus 1 x16 CRISPR array Location: 62067-62994 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 62067-62994 bp Num of repeats: 16 Spacers: s1-s15 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 62067-62994 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: JABTCC010000007.1 Pseudomonas aeruginosa strain 185385 18-5385_ctg_7, whole genome shotgun sequence

⇒Summary: seq-len = 335321 bp; # of CRISPR array = 1; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 325500-335168 bp Zoom in on locus 1 x23 CRISPR array Location: 325500-326845 bp Num of repeats: 23 Spacers: s1-s22 CRISPR array Location: 325500-326845 bp Num of repeats: 23 Spacers: s1-s22 Gene: cd09739:cas6f Type: other Location: 327029-327592 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 327596-328624 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 328635-329618 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 329605-330909 bp Gene: COG1203:cas3 Type: Type-I Location: 330967-334197 bp Gene: cd09718:cas1 Type: universal Location: 334194-335168 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 325500-326845 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)