CRISPRone

CRISPRone report for GCA_013284895.1_ASM1328489v1

♦ Seq 1: JABTCA010000097.1 Pseudomonas aeruginosa strain 174276 17-4276_S85_R1_001_(paired)_contig_97, whole genome shotgun sequence

⇒Summary: seq-len = 674 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1-684 bp Zoom in on locus 1 x2 x8 CRISPR array Location: 1-88 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 1-88 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 237-684 bp Num of repeats: 8 Spacers: s2-s8 CRISPR array Location: 237-684 bp Num of repeats: 8 Spacers: s2-s8 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1-88 bp]: array | spacers
           [Locus range 237-684 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JABTCA010000084.1 Pseudomonas aeruginosa strain 174276 17-4276_S85_R1_001_(paired)_contig_84, whole genome shotgun sequence

⇒Summary: seq-len = 38616 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 37996-38625 bp Zoom in on locus 1 x11 CRISPR array Location: 37996-38625 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 37996-38625 bp Num of repeats: 11 Spacers: s1-s10 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 37996-38625 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: JABTCA010000033.1 Pseudomonas aeruginosa strain 174276 17-4276_S85_R1_001_(paired)_contig_33, whole genome shotgun sequence

⇒Summary: seq-len = 127321 bp; # of CRISPR array = 0; # of cas gene = 4  (type IV) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 20809-29070 bp Zoom in on locus 1 Gene: COG1199:DinG Type: Subtype-IV-A Location: 20809-23175 bp Gene: unk Type: unknown Location: 23568-24215 bp Gene: unk Type: unknown Location: 24281-24568 bp Gene: COG2378:WYL Type: other Location: 24699-25541 bp Gene: pfam13280:WYL Type: other Location: 26283-27299 bp Gene: mkCas0115:csx3 Type: other Location: 27445-29070 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: JABTCA010000076.1 Pseudomonas aeruginosa strain 174276 17-4276_S85_R1_001_(paired)_contig_76, whole genome shotgun sequence

⇒Summary: seq-len = 8561 bp; # of CRISPR array = 1; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1-8412 bp Zoom in on locus 1 x2 CRISPR array Location: 1-89 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 1-89 bp Num of repeats: 2 Spacers: s1-s1 Gene: cd09739:cas6f Type: other Location: 273-836 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 840-1868 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 1879-2862 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 2849-4153 bp Gene: COG1203:cas3 Type: Type-I Location: 4211-7441 bp Gene: cd09718:cas1 Type: universal Location: 7438-8412 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1-89 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: JABTCA010000098.1 Pseudomonas aeruginosa strain 174276 17-4276_S85_R1_001_(paired)_contig_98, whole genome shotgun sequence

⇒Summary: seq-len = 495 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 296-503 bp Zoom in on locus 1 x4 CRISPR array Location: 296-503 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 296-503 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 296-503 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)