CRISPRone

CRISPRone report for GCA_013284915.1_ASM1328491v1

♦ Seq 1: JABTBY010000003.1 Pseudomonas aeruginosa strain 163603 16-3603_ctg_3, whole genome shotgun sequence

⇒Summary: seq-len = 439147 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 147588-159106 bp Zoom in on locus 1 x27 x23 CRISPR array Location: 147588-149177 bp Num of repeats: 27 Spacers: s1-s26 CRISPR array Location: 147588-149177 bp Num of repeats: 27 Spacers: s1-s26 Gene: cd09718:cas1 Type: universal Location: 149438-150412 bp Gene: COG1203:cas3 Type: Type-I Location: 150409-153639 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 153697-155001 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 154988-155971 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 155982-157010 bp Gene: cd09739:cas6f Type: other Location: 157014-157577 bp CRISPR array Location: 157762-159106 bp Num of repeats: 23 Spacers: s27-s48 CRISPR array Location: 157762-159106 bp Num of repeats: 23 Spacers: s27-s48 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 147588-149177 bp]: array | spacers
           [Locus range 157762-159106 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JABTBY010000020.1 Pseudomonas aeruginosa strain 163603 16-3603_ctg_20, whole genome shotgun sequence

⇒Summary: seq-len = 139420 bp; # of CRISPR array = 0; # of cas gene = 4  (type IV) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 32986-41247 bp Zoom in on locus 1 Gene: COG1199:DinG Type: Subtype-IV-A Location: 32986-35352 bp Gene: unk Type: unknown Location: 35745-36392 bp Gene: unk Type: unknown Location: 36458-36745 bp Gene: COG2378:WYL Type: other Location: 36876-37718 bp Gene: pfam13280:WYL Type: other Location: 38460-39476 bp Gene: mkCas0115:csx3 Type: other Location: 39622-41247 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: JABTBY010000031.1 Pseudomonas aeruginosa strain 163603 16-3603_ctg_31, whole genome shotgun sequence

⇒Summary: seq-len = 66560 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 65524-66451 bp Zoom in on locus 1 x16 CRISPR array Location: 65524-66451 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 65524-66451 bp Num of repeats: 16 Spacers: s1-s15 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 65524-66451 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)