CRISPRone

CRISPRone report for GCA_013284945.1_ASM1328494v1

♦ Seq 1: JABTBX010000038.1 Pseudomonas aeruginosa strain 152609 15-2609_ctg_38, whole genome shotgun sequence

⇒Summary: seq-len = 63715 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 62657-63584 bp Zoom in on locus 1 x16 CRISPR array Location: 62657-63584 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 62657-63584 bp Num of repeats: 16 Spacers: s1-s15 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 62657-63584 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JABTBX010000001.1 Pseudomonas aeruginosa strain 152609 15-2609_ctg_1, whole genome shotgun sequence

⇒Summary: seq-len = 549328 bp; # of CRISPR array = 1; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 539485-549153 bp Zoom in on locus 1 x23 CRISPR array Location: 539485-540830 bp Num of repeats: 23 Spacers: s1-s22 CRISPR array Location: 539485-540830 bp Num of repeats: 23 Spacers: s1-s22 Gene: cd09739:cas6f Type: other Location: 541014-541577 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 541581-542609 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 542620-543603 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 543590-544894 bp Gene: COG1203:cas3 Type: Type-I Location: 544952-548182 bp Gene: cd09718:cas1 Type: universal Location: 548179-549153 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 539485-540830 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: JABTBX010000046.1 Pseudomonas aeruginosa strain 152609 15-2609_ctg_46, whole genome shotgun sequence

⇒Summary: seq-len = 23844 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 22152-23741 bp Zoom in on locus 1 x27 CRISPR array Location: 22152-23741 bp Num of repeats: 27 Spacers: s1-s26 CRISPR array Location: 22152-23741 bp Num of repeats: 27 Spacers: s1-s26 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 22152-23741 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: JABTBX010000025.1 Pseudomonas aeruginosa strain 152609 15-2609_ctg_25, whole genome shotgun sequence

⇒Summary: seq-len = 120093 bp; # of CRISPR array = 0; # of cas gene = 4  (type IV) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 13637-21898 bp Zoom in on locus 1 Gene: COG1199:DinG Type: Subtype-IV-A Location: 13637-16003 bp Gene: unk Type: unknown Location: 16396-17043 bp Gene: unk Type: unknown Location: 17109-17396 bp Gene: COG2378:WYL Type: other Location: 17527-18369 bp Gene: pfam13280:WYL Type: other Location: 19111-20127 bp Gene: mkCas0115:csx3 Type: other Location: 20273-21898 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)