CRISPRone

CRISPRone report for GCA_013284955.1_ASM1328495v1

♦ Seq 1: JABTBZ010000008.1 Pseudomonas aeruginosa strain 163915 16-3915_ctg_8, whole genome shotgun sequence

⇒Summary: seq-len = 283806 bp; # of CRISPR array = 1; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 158-9826 bp Zoom in on locus 1 x23 Gene: cd09718:cas1 Type: universal Location: 158-1132 bp Gene: COG1203:cas3 Type: Type-I Location: 1129-4359 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 4417-5721 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 5708-6691 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 6702-7730 bp Gene: cd09739:cas6f Type: other Location: 7734-8297 bp CRISPR array Location: 8482-9826 bp Num of repeats: 23 Spacers: s1-s22 CRISPR array Location: 8482-9826 bp Num of repeats: 23 Spacers: s1-s22 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 8482-9826 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JABTBZ010000018.1 Pseudomonas aeruginosa strain 163915 16-3915_ctg_18, whole genome shotgun sequence

⇒Summary: seq-len = 140108 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 105-1693 bp Zoom in on locus 1 x27 CRISPR array Location: 105-1693 bp Num of repeats: 27 Spacers: s1-s26 CRISPR array Location: 105-1693 bp Num of repeats: 27 Spacers: s1-s26 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 105-1693 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: JABTBZ010000017.1 Pseudomonas aeruginosa strain 163915 16-3915_ctg_17, whole genome shotgun sequence

⇒Summary: seq-len = 148291 bp; # of CRISPR array = 0; # of cas gene = 4  (type IV) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 41718-49979 bp Zoom in on locus 1 Gene: COG1199:DinG Type: Subtype-IV-A Location: 41718-44084 bp Gene: unk Type: unknown Location: 44477-45124 bp Gene: unk Type: unknown Location: 45190-45477 bp Gene: COG2378:WYL Type: other Location: 45608-46450 bp Gene: pfam13280:WYL Type: other Location: 47192-48208 bp Gene: mkCas0115:csx3 Type: other Location: 48354-49979 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: JABTBZ010000001.1 Pseudomonas aeruginosa strain 163915 16-3915_ctg_1, whole genome shotgun sequence

⇒Summary: seq-len = 664579 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 516008-516995 bp Zoom in on locus 1 x17 CRISPR array Location: 516008-516995 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 516008-516995 bp Num of repeats: 17 Spacers: s1-s16 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 516008-516995 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)